##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935691.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 376378 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.36696353134349 33.0 31.0 34.0 30.0 34.0 2 32.579133211824285 34.0 31.0 34.0 31.0 34.0 3 32.427716285223894 34.0 31.0 34.0 30.0 34.0 4 36.049434345259286 37.0 35.0 37.0 35.0 37.0 5 36.08361540791439 37.0 35.0 37.0 35.0 37.0 6 36.10075774885886 37.0 36.0 37.0 35.0 37.0 7 36.23638735526519 37.0 37.0 37.0 35.0 37.0 8 35.99225778339861 37.0 37.0 37.0 35.0 37.0 9 37.81558167586841 39.0 38.0 39.0 35.0 39.0 10 37.702185037382634 39.0 38.0 39.0 35.0 39.0 11 37.67021983218998 39.0 38.0 39.0 35.0 39.0 12 37.596235699217274 39.0 37.0 39.0 35.0 39.0 13 37.581989383013884 39.0 37.0 39.0 35.0 39.0 14 39.001726987230924 41.0 39.0 41.0 35.0 41.0 15 39.08306277200049 41.0 39.0 41.0 35.0 41.0 16 39.10942456785466 41.0 39.0 41.0 35.0 41.0 17 39.07270881932525 41.0 39.0 41.0 35.0 41.0 18 38.405084781788524 39.0 38.0 40.0 35.0 41.0 19 37.69859290394231 37.0 37.0 40.0 35.0 41.0 20 36.85761388816562 36.0 35.0 40.0 34.0 41.0 21 36.82139763748147 35.0 35.0 40.0 34.0 41.0 22 36.80404274426242 35.0 35.0 40.0 34.0 41.0 23 36.815443516889935 35.0 35.0 40.0 34.0 41.0 24 36.6486032658657 35.0 35.0 40.0 34.0 41.0 25 36.559235662020626 35.0 35.0 40.0 33.0 41.0 26 36.40407515848429 35.0 35.0 40.0 33.0 41.0 27 36.296924899967586 35.0 35.0 40.0 33.0 41.0 28 36.15342820249855 35.0 35.0 40.0 33.0 41.0 29 35.89112275425237 35.0 35.0 40.0 33.0 41.0 30 35.335333095983295 35.0 35.0 40.0 30.0 41.0 31 34.63207998342092 35.0 35.0 40.0 23.0 41.0 32 33.51968234062565 35.0 33.0 40.0 17.0 41.0 33 32.28751946181764 35.0 31.0 40.0 12.0 41.0 34 31.272638145693957 35.0 26.0 40.0 8.0 41.0 35 30.647798224125747 35.0 23.0 40.0 7.0 41.0 36 30.26422904633108 35.0 21.0 40.0 7.0 41.0 37 30.07934842100229 35.0 21.0 40.0 7.0 41.0 38 29.903413589529674 35.0 20.0 40.0 7.0 41.0 39 29.746015973303436 35.0 20.0 40.0 7.0 41.0 40 29.598555175913575 35.0 18.0 40.0 7.0 41.0 41 29.41436268857372 35.0 18.0 40.0 7.0 41.0 42 29.309080233169844 35.0 18.0 40.0 7.0 41.0 43 29.16552242692187 35.0 18.0 40.0 7.0 41.0 44 29.045541981731134 35.0 18.0 40.0 7.0 41.0 45 28.971175254664193 35.0 18.0 40.0 7.0 41.0 46 28.900241246831644 35.0 18.0 40.0 7.0 41.0 47 28.89669162384624 35.0 18.0 40.0 7.0 41.0 48 28.843686400374093 35.0 18.0 40.0 7.0 41.0 49 28.802315757031494 35.0 18.0 40.0 7.0 41.0 50 28.658521486378056 35.0 18.0 39.0 7.0 41.0 51 28.019690311335943 34.0 18.0 38.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 8.0 10 8.0 11 6.0 12 3.0 13 3.0 14 12.0 15 23.0 16 53.0 17 119.0 18 217.0 19 443.0 20 756.0 21 1137.0 22 1872.0 23 3217.0 24 6118.0 25 12455.0 26 20746.0 27 25214.0 28 22597.0 29 17483.0 30 13440.0 31 11032.0 32 10682.0 33 10949.0 34 16961.0 35 24808.0 36 24450.0 37 25481.0 38 45683.0 39 80323.0 40 77.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.193613866910393 13.2340359957277 14.802937472434627 45.76941266492728 2 58.93091519695625 15.558295118205635 14.878127839565543 10.63266184527257 3 19.858759013544894 15.765533585916286 53.80813968935485 10.56756771118397 4 18.010085605428586 16.069217648215357 53.76058111791869 12.160115628437369 5 16.267156953913354 18.6283470340987 52.43345785354086 12.671038158447093 6 16.02750426433001 21.713277609212014 52.52379257023524 9.735425556222733 7 48.95211728634511 3.997842594413063 43.579327165774835 3.470712953466993 8 49.11843944120007 4.053637566489009 43.248542688467445 3.579380303843477 9 45.64028715812295 5.100988899457461 44.3171492488934 4.9415746935261895 10 25.153967553895285 17.470468518351232 48.22970524313323 9.145858684620249 11 19.555872022275476 16.04477413663923 52.32479050316437 12.07456333792092 12 18.018587696411586 13.964950129922576 54.86638432639527 13.150077847270564 13 16.310464479858013 14.82366131920569 56.198821397637474 12.667052803298812 14 13.403812125044503 17.51430742498233 54.825202323196365 14.256678126776803 15 12.679274559086876 16.461642285149505 58.104086848859396 12.754996306904228 16 15.125751239445451 15.968255317792218 55.980689625854865 12.925303816907471 17 14.812768015133724 16.136968685736147 54.51115633751176 14.539106961618373 18 14.867234535493573 16.535769890907545 55.15678387153341 13.440211702065477 19 15.733650744730031 17.141809563789597 53.699472338978374 13.425067352502007 20 16.663301255652563 17.14712337065397 54.175058053339995 12.014517320353473 21 16.260514695332883 17.036330497531736 54.3575873191313 12.34556748800408 22 14.689753386223426 15.939295070381371 54.520986880210856 14.84996466318435 23 14.781416554633905 16.47545818299688 54.92085084675512 13.82227441561409 24 15.125751239445451 15.691140289815026 54.949014023136314 14.234094447603207 25 14.663450042244763 16.85911503860481 53.93832795753205 14.539106961618373 26 14.006663513807926 17.542470601363522 53.89634888330349 14.554517001525063 27 14.421671829915669 17.190962277285067 54.61371280999421 13.773653082805051 28 12.85994399247565 17.76219651520546 54.54463332075732 14.833226171561567 29 15.024257528335875 17.12294554942106 53.38276944986158 14.470027472381489 30 15.488949938625533 18.416326140210106 52.22914197960561 13.865581941558752 31 15.842052404763296 19.87682595688377 49.82251885072985 14.458602787623082 32 17.717029156858267 20.41989701842297 47.81974504354665 14.043328781172121 33 16.33543937212058 22.87168750564592 45.164170063074884 15.62870305915861 34 16.393359866942276 24.150720817901153 43.24907406915388 16.206845246002686 35 17.917891056331666 24.412957186658094 40.782936303397115 16.886215453613122 36 17.758476850400395 27.487791528729094 38.57903490639729 16.174696714473217 37 17.920547959763855 27.544383571834697 38.59949306282514 15.935575405576309 38 18.310315693265814 26.732965263644527 37.67781326219917 17.27890578089049 39 19.209411814718184 25.73662647657408 37.56383210495831 17.49012960374942 40 19.07204990727407 25.390431959360004 38.7998235816121 16.73769455175382 41 17.775481032366397 26.198396293088333 37.32524217674784 18.700880497797424 42 18.59513574119635 25.57216415412165 37.34968568832397 18.483014416358024 43 18.23246842270271 25.355892214741566 37.343840500773155 19.06779886178257 44 17.943397329280668 25.353766691995812 37.47057479448852 19.232261184234996 45 18.493376339743556 24.27851787298939 37.4703091041453 19.757796683121757 46 18.250269675698366 25.517431943418583 37.9822943955279 18.25000398535515 47 17.178740521497005 24.562009469203833 40.00366652673642 18.25558348256274 48 17.01985769625217 23.5715158696842 40.50289868164452 18.90572775241911 49 17.619255110553752 22.923497122573583 40.966528330561296 18.490719436311366 50 16.516905876539013 22.684907194363113 40.89718315098119 19.90100377811668 51 16.23314858998135 22.574911392270536 39.973112137266256 21.218827880481854 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 109.0 1 227.5 2 346.0 3 22567.0 4 44788.0 5 29879.5 6 14971.0 7 14226.5 8 13482.0 9 13068.0 10 12654.0 11 12106.0 12 11558.0 13 10934.0 14 10310.0 15 9514.0 16 8718.0 17 8223.5 18 7729.0 19 6936.5 20 6144.0 21 5553.0 22 4962.0 23 4483.0 24 4004.0 25 3774.5 26 3448.5 27 3352.0 28 3349.5 29 3347.0 30 3515.5 31 3684.0 32 3972.5 33 4261.0 34 4991.5 35 5722.0 36 6262.5 37 6803.0 38 7383.5 39 7964.0 40 9119.0 41 10274.0 42 11465.0 43 12656.0 44 14372.5 45 16089.0 46 18996.5 47 21904.0 48 23050.5 49 24197.0 50 23961.0 51 23725.0 52 21027.0 53 18329.0 54 16416.0 55 14503.0 56 13444.0 57 12385.0 58 11851.5 59 11318.0 60 10605.0 61 9892.0 62 8847.0 63 7802.0 64 6653.0 65 5504.0 66 4444.5 67 3385.0 68 2836.0 69 2287.0 70 1897.0 71 1507.0 72 1240.5 73 974.0 74 809.0 75 474.5 76 305.0 77 211.5 78 118.0 79 98.5 80 79.0 81 54.5 82 30.0 83 21.5 84 13.0 85 8.0 86 3.0 87 1.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 376378.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.73005463132008 #Duplication Level Percentage of deduplicated Percentage of total 1 80.80110469333806 40.182433506707156 2 7.373066071055964 7.333259570278912 3 3.0266005237304516 4.515390281768919 4 1.769999845187908 3.52088755994491 5 1.305143439576156 3.2452427275915623 6 1.0625134554937776 3.170331131293094 7 0.8509404839724696 2.9622121729166997 8 0.6994069783655216 2.782523779491511 9 0.5868582987995817 2.626604573413209 >10 2.418198893506103 17.390487241038336 >50 0.07922129743745385 2.820756884781557 >100 0.02425141758289401 2.400524410165168 >500 0.002155681562923912 0.5823757444779402 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 5.38920390730978E-4 6.466970416131016 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24130 6.411107981869291 No Hit GCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC 627 0.16658784519817843 RNA PCR Primer, Index 40 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 526 0.1397531205330811 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 519 0.1378932881305496 No Hit GAATCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTC 501 0.1331108619526115 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGC 466 0.12381169993995397 No Hit CCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC 436 0.11584098964339042 Illumina PCR Primer Index 8 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 418 0.11105856346545229 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCG 413 0.10973011174935836 No Hit CTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGCT 409 0.10866735037648322 Illumina PCR Primer Index 8 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.313806864375708E-4 0.0 0.0 0.11690375101626556 0.0 2 5.313806864375708E-4 0.0 0.0 0.5135794334419121 0.0 3 5.313806864375708E-4 0.0 0.0 0.7497781485634123 0.0 4 5.313806864375708E-4 0.0 0.0 1.090393168569895 0.0 5 5.313806864375708E-4 0.0 0.0 2.0976252597123106 0.0 6 5.313806864375708E-4 0.0 0.0 2.646541508802321 0.0 7 5.313806864375708E-4 0.0 0.0 3.1340832886087924 0.0 8 5.313806864375708E-4 0.0 0.0 3.883595746828986 0.0 9 5.313806864375708E-4 0.0 0.0 4.150083161077427 0.0 10 5.313806864375708E-4 0.0 0.0 4.861601900217335 0.0 11 5.313806864375708E-4 0.0 0.0 5.7747796098603 0.0 12 5.313806864375708E-4 0.0 0.0 6.6268485405629445 0.0 13 5.313806864375708E-4 0.0 0.0 6.951256449633082 0.0 14 5.313806864375708E-4 0.0 0.0 7.075333839916254 0.0 15 5.313806864375708E-4 0.0 0.0 7.324285691512256 0.0 16 5.313806864375708E-4 0.0 0.0 7.769317016403722 0.0 17 5.313806864375708E-4 0.0 0.0 8.344270919129173 0.0 18 5.313806864375708E-4 0.0 0.0 8.91151980190128 0.0 19 5.313806864375708E-4 0.0 0.0 9.312446529818427 0.0 20 5.313806864375708E-4 0.0 0.0 9.705668237782229 0.0 21 5.313806864375708E-4 0.0 0.0 10.13422676139413 0.0 22 5.313806864375708E-4 0.0 0.0 10.616189043993007 0.0 23 5.313806864375708E-4 0.0 0.0 11.07264505364288 0.0 24 5.313806864375708E-4 0.0 0.0 11.439563417628023 0.0 25 5.313806864375708E-4 0.0 0.0 11.77672446317266 0.0 26 5.313806864375708E-4 0.0 0.0 12.067655388997231 0.0 27 5.313806864375708E-4 0.0 0.0 12.358054934135364 0.0 28 5.313806864375708E-4 0.0 0.0 12.678211797714 0.0 29 5.313806864375708E-4 0.0 0.0 13.006605061932419 0.0 30 5.313806864375708E-4 0.0 0.0 13.408594551222441 0.0 31 5.313806864375708E-4 0.0 0.0 13.763556849762738 0.0 32 5.313806864375708E-4 0.0 0.0 14.09141873329472 0.0 33 5.313806864375708E-4 0.0 0.0 14.433627895360516 0.0 34 5.313806864375708E-4 0.0 0.0 14.784339148409313 0.0 35 5.313806864375708E-4 0.0 0.0 15.127079691161544 0.0 36 5.313806864375708E-4 0.0 0.0 15.442188438219025 0.0 37 7.970710296563561E-4 0.0 0.0 15.755703043217192 0.0 38 7.970710296563561E-4 0.0 0.0 16.086221830181362 0.0 39 7.970710296563561E-4 0.0 0.0 16.428696682590374 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGATACG 20 7.0272345E-4 45.0 9 AGACGTG 20 7.0272345E-4 45.0 24 GTTACGG 25 3.8857892E-5 45.0 2 GTTAACG 20 7.0272345E-4 45.0 1 CGAGGGC 45 3.8380676E-10 45.0 4 GTATACG 20 7.0272345E-4 45.0 1 ATACGAG 20 7.0272345E-4 45.0 1 TATACGG 35 1.2090095E-7 45.0 2 AGTACTG 20 7.0272345E-4 45.0 39 CGTTTTT 14505 0.0 44.581177 1 TACGGCT 50 1.0768417E-9 40.5 7 GTTTTTT 16050 0.0 40.35981 2 CACGGGC 45 1.922308E-8 40.0 4 CGGGCTC 45 1.922308E-8 40.0 6 TCGATGG 35 6.237098E-6 38.571426 2 TTAACGG 35 6.237098E-6 38.571426 2 TACACGC 90 0.0 37.5 35 TAGTAGG 90 0.0 37.5 2 CGAATAT 30 1.13846385E-4 37.499996 14 GCTACGA 30 1.13846385E-4 37.499996 10 >>END_MODULE