##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935690.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 541436 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42807275467461 33.0 31.0 34.0 31.0 34.0 2 32.625043403098424 34.0 31.0 34.0 31.0 34.0 3 32.47643673490496 34.0 31.0 34.0 31.0 34.0 4 36.084449500956715 37.0 35.0 37.0 35.0 37.0 5 36.12515421951994 37.0 35.0 37.0 35.0 37.0 6 36.1444695217902 37.0 36.0 37.0 35.0 37.0 7 36.29757903057794 37.0 37.0 37.0 35.0 37.0 8 36.10723151028007 37.0 37.0 37.0 35.0 37.0 9 37.92885216350594 39.0 39.0 39.0 35.0 39.0 10 37.71155039561462 39.0 38.0 39.0 35.0 39.0 11 37.693847472277426 39.0 38.0 39.0 35.0 39.0 12 37.68560642439734 39.0 38.0 39.0 35.0 39.0 13 37.72063180135787 39.0 38.0 39.0 35.0 39.0 14 39.157737941326396 41.0 39.0 41.0 35.0 41.0 15 39.24517025096225 41.0 39.0 41.0 35.0 41.0 16 39.28914774784093 41.0 39.0 41.0 35.0 41.0 17 39.24405469898566 41.0 39.0 41.0 35.0 41.0 18 38.59438973396671 39.0 39.0 41.0 35.0 41.0 19 37.90990994318811 37.0 37.0 41.0 35.0 41.0 20 37.11097895226767 37.0 35.0 41.0 34.0 41.0 21 37.08723838089821 37.0 35.0 41.0 34.0 41.0 22 37.08119519204486 37.0 35.0 41.0 34.0 41.0 23 37.08307537732991 37.0 35.0 41.0 34.0 41.0 24 36.9403105814907 37.0 35.0 41.0 34.0 41.0 25 36.86374566892486 37.0 35.0 40.0 34.0 41.0 26 36.7163118078591 36.0 35.0 40.0 34.0 41.0 27 36.64241203023072 36.0 35.0 40.0 33.0 41.0 28 36.503160114953566 36.0 35.0 40.0 33.0 41.0 29 36.23548120184103 36.0 35.0 40.0 33.0 41.0 30 35.68678292540577 36.0 35.0 40.0 31.0 41.0 31 34.979901595017694 36.0 35.0 40.0 24.0 41.0 32 33.83919613767832 36.0 34.0 40.0 17.0 41.0 33 32.574372594360185 36.0 33.0 40.0 12.0 41.0 34 31.55647758922569 36.0 27.0 40.0 7.0 41.0 35 30.92455618023183 36.0 23.0 40.0 7.0 41.0 36 30.56911804903996 36.0 22.0 40.0 7.0 41.0 37 30.425483344291845 36.0 21.0 40.0 7.0 41.0 38 30.260004875922547 35.0 21.0 40.0 7.0 41.0 39 30.15217311002593 35.0 20.0 40.0 7.0 41.0 40 30.052731994178444 35.0 20.0 40.0 7.0 41.0 41 29.897733065403852 35.0 18.0 40.0 7.0 41.0 42 29.826563065625486 35.0 18.0 40.0 7.0 41.0 43 29.74046055304782 35.0 18.0 40.0 7.0 41.0 44 29.62616264895574 35.0 18.0 40.0 7.0 41.0 45 29.554795026559002 35.0 18.0 40.0 7.0 41.0 46 29.46055304782098 35.0 18.0 40.0 7.0 41.0 47 29.445753514727503 35.0 18.0 40.0 7.0 41.0 48 29.38855561876196 35.0 18.0 40.0 7.0 41.0 49 29.349919473400366 35.0 18.0 40.0 7.0 41.0 50 29.2224953641797 35.0 18.0 40.0 7.0 41.0 51 28.54949984855089 35.0 18.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 5.0 10 7.0 11 7.0 12 10.0 13 6.0 14 19.0 15 26.0 16 56.0 17 101.0 18 247.0 19 495.0 20 820.0 21 1398.0 22 2371.0 23 4271.0 24 8842.0 25 18684.0 26 31030.0 27 35565.0 28 31113.0 29 22959.0 30 17156.0 31 14119.0 32 13061.0 33 14025.0 34 21368.0 35 29954.0 36 31330.0 37 35042.0 38 70554.0 39 136656.0 40 134.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.764197430536573 13.650551496391078 15.649125658434237 43.93612541463811 2 58.0116578875435 15.321663132854113 15.884610554155984 10.782068425446406 3 20.490325726401643 15.474774488582216 53.39338352085935 10.641516264156797 4 18.22449929446878 16.32492113564669 53.13776697522884 12.312812594655693 5 16.310699694885454 19.21095013999808 52.003376206975524 12.474973958140943 6 16.643148959433802 22.041016851483832 51.63287997103998 9.682954218042392 7 51.91693939819295 3.496812180941053 41.42354775079603 3.1627006700699622 8 52.740859492165285 3.148663923344587 40.97880451244468 3.1316720720454496 9 48.740756063505195 4.88441847235869 42.26538316624679 4.109442297889316 10 24.141911509393537 19.568702487459273 47.270776232093915 9.018609771053274 11 17.765349921320343 16.638900996609017 53.121698594109 12.474050487961643 12 16.473599834514143 14.750404479938533 55.762638612873914 13.01335707267341 13 15.314275371419706 15.526119430551349 56.71935371862972 12.440251479399226 14 13.052327514239911 18.414180069297203 54.887004188860736 13.646488227602156 15 12.312443206583973 18.290065677199152 57.17000716612859 12.227483950088283 16 14.483706292156414 17.352189363101086 55.672507923374134 12.491596421368362 17 14.332811264858636 17.33704445216055 54.150444373850284 14.179699909130534 18 15.082484356415163 17.23047599346922 54.74866835600145 12.93837129411417 19 14.979979166512756 18.58299041807342 53.21700071661286 13.220029698800968 20 15.641922591035689 18.01173176515784 54.14398008259518 12.202365561211298 21 15.187759956855473 17.651024313122882 54.837875575321924 12.323340154699725 22 14.391543968262177 16.886021616589957 54.193847472277426 14.528586942870442 23 13.558389172496843 17.654533499804224 54.78394491685074 14.00313241084819 24 14.421095013999807 16.779637851934485 54.63655907623431 14.162708057831397 25 13.554325903707918 18.171122718105188 53.56311733981486 14.711434038372031 26 13.505197290169106 18.62122208349648 53.978124838392716 13.895455787941696 27 14.42238787225083 17.872472462119255 53.79934101168005 13.905798653949866 28 12.748690519285752 18.22228296603846 54.16134132196603 14.867685192709757 29 13.768016903198163 17.366410803862323 54.417327255668255 14.448245037271256 30 15.4038519788119 17.279419912972173 53.07552508514395 14.24120302307198 31 15.31907741635207 18.65853027874024 50.64273524479348 15.379657060114216 32 15.905850368279909 19.807511875826506 49.73034670764412 14.55629104824947 33 16.23829963282826 20.70475550203533 47.404494714056696 15.652450151079723 34 16.40433957106657 21.964184132565993 44.952496693976755 16.67897960239068 35 17.200001477552288 23.068100384902372 42.92954291920005 16.802355218345287 36 17.262058673601313 24.950317304353607 41.424471220975335 16.363152801069745 37 18.253865646170553 24.946069341528823 40.56084190929307 16.239223103007557 38 17.63015388707068 25.033429620490693 39.93269749333255 17.40371899910608 39 18.816997761508286 23.762549959736702 40.44743977127491 16.97301250748011 40 18.733331363263616 23.302107728337237 41.42484060904705 16.539720299352094 41 17.348126094312164 24.24035343050702 40.39092339630169 18.020597078879128 42 17.825375482974902 24.46752709461506 40.221189577346166 17.485907845063867 43 18.425077017412953 23.956294003354046 39.491832829734264 18.12679614949874 44 17.85123264799533 24.226316683781647 38.75619648490311 19.16625418331991 45 18.340117760917266 22.994038076522433 38.90967722870293 19.756166933857372 46 18.428770898130157 23.391869029765292 39.91921482871475 18.2601452433898 47 17.28052807718733 23.05812690696592 41.69412451333122 17.96722050251553 48 17.21126781373976 22.41132839338352 41.43038143012286 18.947022362753863 49 17.471317016230913 21.88735141364815 42.01253703115419 18.628794538966748 50 16.650721414904073 21.62065322586603 41.788687859691635 19.939937499538267 51 16.682119401000303 21.402714263551 40.475882652797374 21.43928368265132 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 120.0 1 252.5 2 385.0 3 27798.5 4 55212.0 5 37814.0 6 20416.0 7 19741.0 8 19066.0 9 18708.0 10 18350.0 11 17705.0 12 17060.0 13 16041.5 14 15023.0 15 13952.0 16 12881.0 17 11812.0 18 10743.0 19 9918.5 20 9094.0 21 8197.0 22 7300.0 23 6732.0 24 6164.0 25 5930.0 26 5801.5 27 5907.0 28 6235.5 29 6564.0 30 7188.0 31 7812.0 32 8360.5 33 8909.0 34 10021.5 35 11134.0 36 12143.5 37 13153.0 38 14028.5 39 14904.0 40 16156.0 41 17408.0 42 19199.0 43 20990.0 44 22896.0 45 24802.0 46 28843.5 47 32885.0 48 34695.5 49 36506.0 50 35905.0 51 35304.0 52 30901.5 53 26499.0 54 23028.0 55 19557.0 56 17552.0 57 15547.0 58 14212.0 59 12877.0 60 12060.0 61 11243.0 62 10020.5 63 8798.0 64 7338.5 65 5879.0 66 4431.5 67 2984.0 68 2332.0 69 1680.0 70 1447.5 71 1215.0 72 922.0 73 629.0 74 481.0 75 281.0 76 229.0 77 172.0 78 115.0 79 67.5 80 20.0 81 20.5 82 21.0 83 17.0 84 13.0 85 9.5 86 6.0 87 4.0 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 541436.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.30017732232487 #Duplication Level Percentage of deduplicated Percentage of total 1 80.62182986205329 38.9404867838748 2 7.730864536495181 7.468042559351802 3 2.910743024390073 4.2176821265328215 4 1.7026995039723043 3.289627518739876 5 1.172405756187108 2.8313702958775853 6 0.8913869392265562 2.583248833646825 7 0.7434920805231641 2.513755952890915 8 0.6255273073574343 2.417046389225639 9 0.5172399728188575 2.248450416481078 >10 2.9691765102260623 21.583609659170648 >50 0.08193674477447858 2.8434970677903957 >100 0.029235646001639144 2.4536867653517107 >500 0.0030774364212251726 1.0148445488680178 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.846795526531466E-4 5.594651082197893 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30111 5.561322113786302 No Hit GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 932 0.1721348414217008 TruSeq Adapter, Index 14 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 918 0.1695491249196581 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 679 0.1254072503490717 No Hit CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT 631 0.11654193662778242 TruSeq Adapter, Index 21 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG 629 0.11617254855606203 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 578 0.10675315272719213 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 573 0.10582968254789116 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.69388071720388E-4 0.0 0.0 0.12171336963186785 0.0 2 3.69388071720388E-4 0.0 0.0 0.5875117280712772 0.0 3 3.69388071720388E-4 0.0 0.0 0.9050007757149506 0.0 4 3.69388071720388E-4 0.0 0.0 1.2577663842079212 0.0 5 3.69388071720388E-4 0.0 0.0 2.233135587585606 0.0 6 3.69388071720388E-4 0.0 0.0 2.809565673505271 0.0 7 3.69388071720388E-4 0.0 0.0 3.3189518244076863 0.0 8 3.69388071720388E-4 0.0 0.0 4.091342282375018 0.0 9 3.69388071720388E-4 0.0 0.0 4.351760872937891 0.0 10 3.69388071720388E-4 0.0 0.0 5.065603321537541 0.0 11 3.69388071720388E-4 0.0 0.0 6.029336800656033 0.0 12 3.69388071720388E-4 0.0 0.0 6.82610687135691 0.0 13 3.69388071720388E-4 0.0 0.0 7.165020427160366 0.0 14 3.69388071720388E-4 0.0 0.0 7.297261356836265 0.0 15 3.69388071720388E-4 0.0 0.0 7.5284982897332275 0.0 16 3.69388071720388E-4 0.0 0.0 8.038069134671503 0.0 17 3.69388071720388E-4 0.0 0.0 8.69096255143729 0.0 18 3.69388071720388E-4 0.0 0.0 9.352351893852644 0.0 19 3.69388071720388E-4 0.0 0.0 9.78656757215996 0.0 20 5.54082107580582E-4 0.0 0.0 10.194556697375129 0.0 21 5.54082107580582E-4 0.0 0.0 10.713916326213994 0.0 22 5.54082107580582E-4 0.0 0.0 11.28074232226893 0.0 23 5.54082107580582E-4 0.0 0.0 11.856433632045155 0.0 24 5.54082107580582E-4 0.0 0.0 12.283630936989782 0.0 25 5.54082107580582E-4 0.0 0.0 12.677768009515436 0.0 26 5.54082107580582E-4 0.0 0.0 13.039398931729696 0.0 27 5.54082107580582E-4 0.0 0.0 13.389024741613044 0.0 28 5.54082107580582E-4 0.0 0.0 13.776328134811871 0.0 29 5.54082107580582E-4 0.0 0.0 14.179515215094675 0.0 30 5.54082107580582E-4 0.0 0.0 14.6419890808886 0.0 31 7.38776143440776E-4 0.0 0.0 15.058104743681618 0.0 32 7.38776143440776E-4 0.0 0.0 15.453904062530013 0.0 33 7.38776143440776E-4 0.0 0.0 15.854320732274914 0.0 34 7.38776143440776E-4 0.0 0.0 16.23349758789589 0.0 35 7.38776143440776E-4 0.0 0.0 16.61101219719413 0.0 36 7.38776143440776E-4 0.0 0.0 17.006442127970804 0.0 37 7.38776143440776E-4 0.0 0.0 17.388758782201407 0.0 38 7.38776143440776E-4 0.0 0.0 17.789729534053887 0.0 39 7.38776143440776E-4 0.0 0.0 18.181465584113358 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCGG 30 2.163366E-6 45.000004 2 TTGCGAG 20 7.029975E-4 45.000004 1 TGTGTCG 20 7.029975E-4 45.000004 1 CTGGCGA 20 7.029975E-4 45.000004 14 CGCGGGT 25 3.888063E-5 45.0 4 TAGTTCG 35 1.2103374E-7 45.0 1 CGTTTTT 19970 0.0 44.63946 1 ACGGGCG 55 6.002665E-11 40.90909 5 TAGGGCG 110 0.0 40.90909 5 GTTTTTT 22235 0.0 40.102318 2 CGGGTGA 45 1.9250365E-8 40.0 6 TCGTTGG 40 3.453697E-7 39.375004 2 TACGGGT 40 3.453697E-7 39.375004 4 AGACACG 40 3.453697E-7 39.375004 24 GCGAAAG 35 6.2421695E-6 38.571426 1 TACTAGG 35 6.2421695E-6 38.571426 2 TTACGGG 65 9.094947E-12 38.07692 3 CCCGCAC 125 0.0 37.8 33 CGGGTCA 30 1.1391243E-4 37.500004 6 TGCGTAG 60 1.546141E-10 37.500004 1 >>END_MODULE