##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935689.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 284062 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.307996141687376 33.0 31.0 34.0 30.0 34.0 2 32.50872344769804 34.0 31.0 34.0 30.0 34.0 3 32.37541452218178 34.0 31.0 34.0 30.0 34.0 4 36.03409466947357 37.0 35.0 37.0 35.0 37.0 5 36.021498827720706 37.0 35.0 37.0 35.0 37.0 6 36.03254571185164 37.0 35.0 37.0 35.0 37.0 7 36.16366497454781 37.0 36.0 37.0 35.0 37.0 8 35.70990135956235 37.0 35.0 37.0 35.0 37.0 9 37.60276981785667 39.0 38.0 39.0 35.0 39.0 10 37.557568418162234 39.0 37.0 39.0 35.0 39.0 11 37.549446951721805 39.0 37.0 39.0 35.0 39.0 12 37.4509649301913 39.0 37.0 39.0 35.0 39.0 13 37.36981011187699 39.0 37.0 39.0 34.0 39.0 14 38.778611711527766 40.0 38.0 41.0 35.0 41.0 15 38.81028085417972 41.0 38.0 41.0 35.0 41.0 16 38.954393759108925 41.0 38.0 41.0 35.0 41.0 17 38.803451359210314 41.0 38.0 41.0 34.0 41.0 18 38.21213678703945 39.0 38.0 40.0 35.0 41.0 19 37.558469629869535 37.0 37.0 40.0 35.0 41.0 20 36.55164365525836 35.0 35.0 40.0 33.0 41.0 21 36.6743070174821 35.0 35.0 40.0 33.0 41.0 22 36.620061817490544 35.0 35.0 40.0 33.0 41.0 23 36.5085192669206 35.0 35.0 40.0 33.0 41.0 24 36.42750174257733 35.0 35.0 40.0 33.0 41.0 25 36.47207299814829 35.0 35.0 40.0 33.0 41.0 26 36.24302793052221 35.0 35.0 40.0 33.0 41.0 27 36.05624476346713 35.0 35.0 40.0 33.0 41.0 28 35.924762903873095 35.0 35.0 40.0 32.0 41.0 29 35.73256894621597 35.0 35.0 40.0 31.0 41.0 30 35.22586970450113 35.0 35.0 40.0 30.0 41.0 31 34.60699072737642 35.0 35.0 40.0 23.0 41.0 32 33.4054783814801 35.0 33.0 40.0 16.0 41.0 33 32.30728502932458 35.0 31.0 40.0 12.0 41.0 34 31.285127894614558 35.0 27.0 40.0 8.0 41.0 35 30.752110454759876 35.0 23.0 40.0 7.0 41.0 36 30.343048348599954 35.0 22.0 40.0 7.0 41.0 37 30.098594672993922 35.0 21.0 40.0 7.0 41.0 38 30.048334518520605 35.0 21.0 40.0 7.0 41.0 39 29.76312565566672 35.0 19.0 40.0 7.0 41.0 40 29.700780111384134 35.0 19.0 40.0 7.0 41.0 41 29.597489280509183 35.0 20.0 40.0 7.0 41.0 42 29.397758235878083 35.0 18.0 40.0 7.0 41.0 43 29.271944153037012 35.0 18.0 40.0 7.0 41.0 44 29.27255317501109 35.0 18.0 40.0 7.0 41.0 45 29.2593975962994 35.0 18.0 40.0 7.0 41.0 46 29.23379403088058 35.0 18.0 40.0 7.0 41.0 47 29.149844048130337 35.0 18.0 40.0 7.0 41.0 48 29.19217283550774 35.0 20.0 40.0 7.0 41.0 49 29.182879089776176 35.0 20.0 40.0 7.0 41.0 50 29.02203392217192 35.0 18.0 40.0 7.0 41.0 51 28.508987474565412 35.0 18.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 5.0 10 4.0 11 5.0 12 8.0 13 6.0 14 5.0 15 16.0 16 29.0 17 71.0 18 170.0 19 339.0 20 601.0 21 1173.0 22 2059.0 23 3392.0 24 5228.0 25 9409.0 26 14932.0 27 18467.0 28 16028.0 29 12507.0 30 9712.0 31 8439.0 32 8032.0 33 8840.0 34 13046.0 35 19491.0 36 18754.0 37 18080.0 38 32163.0 39 62979.0 40 70.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.28907773655047 11.438700002112215 12.633509585935466 43.63871267540185 2 54.755299899317755 21.949433574360526 13.187966007420915 10.107300518900804 3 18.125268427315163 22.349698305299547 50.00140814329266 9.523625124092627 4 16.937851595778387 13.942730812287458 58.58122522547895 10.538192366455212 5 21.52839872985475 16.541459258894182 49.71837134146771 12.211770669783357 6 14.765086495201752 26.264688694721578 50.23199160746598 8.738233202610697 7 44.60716322492977 3.76291091381459 48.241229027465835 3.388696833789807 8 43.47853637586161 10.455815983834515 42.095387626644886 3.9702600136589896 9 40.2250212981673 5.080228964099387 42.42770944371299 12.267040294020319 10 27.811182065887024 15.130499679647402 47.31678295583359 9.74153529863199 11 23.379051052235074 14.149727876308694 50.53368630791869 11.937534763537537 12 18.16293626039386 13.026381564588013 52.54064253578444 16.270039639233687 13 17.591934155219636 14.73481141440953 55.900120396251516 11.773134034119312 14 12.24803035956939 22.033922171920214 51.51410607543424 14.203941393076159 15 10.759622899226224 15.325175489857848 58.86813442135872 15.04706718955721 16 12.000197140060973 16.070787363322093 54.01813688560948 17.910878611007455 17 11.937534763537537 17.990790742865993 54.82007449078018 15.251600002816287 18 12.236765213228098 16.9163774105653 53.81606832311257 17.030789053094043 19 14.579211580570439 16.41648654167048 51.97703318289669 17.02726869486239 20 18.103794242102076 16.26088670783139 54.6532095105998 10.982109539466736 21 14.828452943371516 20.473699403651317 52.450169329230945 12.247678323746225 22 12.802134745231674 15.471974428117804 55.10733572248312 16.618555104167402 23 15.46246946089234 18.169976976857168 52.82579155254838 13.541762009702108 24 14.612654983771147 17.082186283276187 52.23753969203906 16.067619040913602 25 12.725390935781626 21.459047672691174 51.47573417070921 14.339827220817991 26 12.570847209412031 16.09824615752899 55.8078870105822 15.523019622476783 27 16.974815357210748 17.092747357971145 52.120663798748154 13.811773486069942 28 11.093704895410157 18.782167273341734 54.972506002210785 15.151621829037323 29 14.348980152220289 15.17696840830523 55.955037984665324 14.519013454809162 30 15.152325900683653 19.4858868838493 51.98090557695151 13.380881638515534 31 14.973843738338813 16.250677668959593 49.08435482394688 19.69112376875471 32 18.149910934936738 19.324654476839566 49.213551971048574 13.311882617175124 33 18.677260598038455 19.219747801536286 43.911540438355004 18.19145116207025 34 15.42304144869782 20.33288507438517 46.13746294822961 18.1066105286874 35 19.10216783659905 20.531433278650436 42.56042694904634 17.805971935704175 36 16.335870338165613 24.504509578894748 40.00570298033528 19.15391710260436 37 18.01860157289606 23.29280227555956 42.270349430758074 16.418246720786307 38 17.481042870922543 23.493814730586983 37.645302786011506 21.379839612478964 39 17.739789200949087 23.281185093395106 41.50396744372708 17.475058261928734 40 18.574818173497334 21.90859741887334 41.576838859122304 17.939745548507016 41 15.212171990621764 24.17324386929614 38.87637205962079 21.73821208046131 42 16.656222937246092 23.154100161232407 41.60570579662187 18.583971104899636 43 18.187578768015435 23.450514324337647 37.18519196513437 21.17671494251255 44 18.232639353380602 22.526772324351725 40.26726559694714 18.97332272532053 45 16.225331089691686 21.30203969555942 39.955009821799464 22.517619392949424 46 19.475677844977504 23.94688483500081 39.13511838964733 17.442318930374352 47 15.77402116439369 22.49684927938267 44.71946265251952 17.009666903704122 48 16.71747717047687 22.016672416585113 40.73371306264125 20.532137350296768 49 15.531116446409587 19.92874794939133 45.65834219290155 18.881793411297533 50 16.38093092353078 20.537065851821083 42.41679633319487 20.665206891453273 51 15.387837866381282 20.405756489780398 41.26986362132211 22.936542022516214 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 73.0 1 150.5 2 228.0 3 16736.0 4 33244.0 5 22208.5 6 11173.0 7 10593.0 8 10013.0 9 9533.5 10 9054.0 11 8717.5 12 8381.0 13 7932.5 14 7484.0 15 6810.0 16 6136.0 17 5570.0 18 5004.0 19 4543.5 20 4083.0 21 3731.0 22 3379.0 23 3015.5 24 2652.0 25 2589.5 26 2530.5 27 2534.0 28 2692.5 29 2851.0 30 2904.0 31 2957.0 32 3325.5 33 3694.0 34 4035.0 35 4376.0 36 4593.5 37 4811.0 38 5261.5 39 5712.0 40 6557.0 41 7402.0 42 8202.5 43 9003.0 44 10189.5 45 11376.0 46 19473.5 47 27571.0 48 22875.5 49 18180.0 50 17586.5 51 16993.0 52 14843.5 53 12694.0 54 11825.5 55 10957.0 56 10157.0 57 9357.0 58 8573.0 59 7789.0 60 7366.5 61 6944.0 62 6240.0 63 5536.0 64 4660.5 65 3785.0 66 3008.0 67 2231.0 68 1926.5 69 1622.0 70 1307.5 71 993.0 72 772.5 73 552.0 74 475.0 75 277.5 76 157.0 77 119.5 78 82.0 79 60.5 80 39.0 81 26.5 82 14.0 83 16.0 84 18.0 85 10.5 86 3.0 87 1.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 284062.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.212110980062576 #Duplication Level Percentage of deduplicated Percentage of total 1 77.63317717270426 29.66527581858236 2 8.538934454977532 6.525814220901633 3 3.0496438705636106 3.4959999009493288 4 1.6903965006022494 2.583744747252903 5 1.19873558192052 2.29031085460484 6 0.9553214631806636 2.190290986361717 7 0.8686030241705558 2.323380861005628 8 0.64148330521699 1.9609945000647184 9 0.6564230204224336 2.2574978375624926 >10 4.626833070464637 28.115745331773923 >50 0.09462844609057076 2.4755953953663123 >100 0.03585920062379524 2.6145241037471094 >500 0.004980444531082672 1.3321930940624374 >1k 0.003984355624866137 4.829770905873791 >5k 0.0 0.0 >10k+ 9.960889062165343E-4 7.338861441890816 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19281 6.787602706451408 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC 4157 1.4634129168984236 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG 3740 1.3166139786384663 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC 3484 1.2264928079081328 TruSeq Adapter, Index 23 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 1308 0.4604628567002978 TruSeq Adapter, Index 23 (95% over 24bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCTGTTCT 985 0.34675528581788484 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCT 840 0.2957100914589068 No Hit CCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 580 0.20418077743591187 TruSeq Adapter, Index 23 (95% over 24bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTA 568 0.1999563475579275 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTC 527 0.1855228788081475 No Hit GAACTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCT 481 0.1693292309425407 Illumina PCR Primer Index 5 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 431 0.15172743978427244 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 353 0.12426864557737395 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 343 0.1207482873457203 No Hit CTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGCT 340 0.1196921798762242 Illumina PCR Primer Index 5 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA 294 0.1034985320106174 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.520358231653653E-4 0.0 0.0 0.12497271722370469 0.0 2 3.520358231653653E-4 0.0 0.0 0.9293745731565645 0.0 3 3.520358231653653E-4 0.0 0.0 1.208538980926699 0.0 4 3.520358231653653E-4 0.0 0.0 1.6489357957065711 0.0 5 3.520358231653653E-4 0.0 0.0 3.63300969506657 0.0 6 3.520358231653653E-4 0.0 0.0 4.088544050242553 0.0 7 3.520358231653653E-4 0.0 0.0 4.778182227823503 0.0 8 3.520358231653653E-4 0.0 0.0 5.522033922171921 0.0 9 3.520358231653653E-4 0.0 0.0 5.725862663784667 0.0 10 3.520358231653653E-4 0.0 0.0 7.595172884792756 0.0 11 3.520358231653653E-4 0.0 0.0 8.341840865726496 0.0 12 3.520358231653653E-4 0.0 0.0 10.445254909139553 0.0 13 3.520358231653653E-4 0.0 0.0 10.771592117213848 0.0 14 3.520358231653653E-4 0.0 0.0 10.940217276510058 0.0 15 3.520358231653653E-4 0.0 0.0 11.36090008519267 0.0 16 3.520358231653653E-4 0.0 0.0 11.819250726953975 0.0 17 3.520358231653653E-4 0.0 0.0 12.298019446458872 0.0 18 3.520358231653653E-4 0.0 0.0 12.791221634713548 0.0 19 3.520358231653653E-4 0.0 0.0 13.488252564580971 0.0 20 3.520358231653653E-4 0.0 0.0 13.887813223873662 0.0 21 3.520358231653653E-4 0.0 0.0 14.273292450239737 0.0 22 3.520358231653653E-4 0.0 0.0 14.771071104195563 0.0 23 3.520358231653653E-4 0.0 0.0 15.149861649921496 0.0 24 3.520358231653653E-4 0.0 0.0 15.464229640008167 0.0 25 3.520358231653653E-4 0.0 0.0 15.749378656772112 0.0 26 3.520358231653653E-4 0.0 0.0 15.997563912103695 0.0 27 3.520358231653653E-4 0.0 0.0 16.33833458892777 0.0 28 3.520358231653653E-4 0.0 0.0 16.589336130844675 0.0 29 3.520358231653653E-4 0.0 0.0 16.85617928480402 0.0 30 3.520358231653653E-4 0.0 0.0 17.152945483732424 0.0 31 3.520358231653653E-4 0.0 0.0 17.438446536319535 0.0 32 3.520358231653653E-4 0.0 0.0 17.712682442565356 0.0 33 3.520358231653653E-4 0.0 0.0 17.99360702945132 0.0 34 3.520358231653653E-4 0.0 0.0 18.26608275658131 0.0 35 3.520358231653653E-4 0.0 0.0 18.56073674057072 0.0 36 7.040716463307306E-4 0.0 0.0 18.843069470749345 0.0 37 7.040716463307306E-4 0.0 0.0 19.131738845744945 0.0 38 7.040716463307306E-4 0.0 0.0 19.411959360984575 0.0 39 7.040716463307306E-4 0.0 0.0 19.68478712393773 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCGGC 30 2.1597116E-6 45.000004 6 AAACGAT 30 2.1597116E-6 45.000004 16 TCTCGAA 60 0.0 45.000004 42 AATTATC 60 0.0 45.000004 45 CTCTCGA 60 0.0 45.000004 41 AACAAGC 45 3.8198777E-10 45.0 13 CTACTGG 25 3.8833678E-5 45.0 2 ACTGACG 20 7.024311E-4 45.0 43 GCGAACC 20 7.024311E-4 45.0 33 CTATATC 20 7.024311E-4 45.0 19 CGTCTAC 20 7.024311E-4 45.0 42 AATGGGC 35 1.2076089E-7 45.0 4 AGGGTGT 20 7.024311E-4 45.0 6 CCTCGAA 40 6.7830115E-9 45.0 42 CCGTCTA 25 3.8833678E-5 45.0 41 CACCTCG 25 3.8833678E-5 45.0 38 GTTACGG 20 7.024311E-4 45.0 2 TACGCGG 20 7.024311E-4 45.0 2 TAACCAG 20 7.024311E-4 45.0 1 TGCGAAG 20 7.024311E-4 45.0 1 >>END_MODULE