SRR2935688.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935688.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	561361
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39862	7.1009564255443465	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC	3310	0.5896383966823489	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG	2942	0.5240834329424381	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC	2933	0.5224801865466251	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	1084	0.19310212145125863	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	935	0.16655948667613174	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	768	0.1368103591093788	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACGATT	736	0.13110992747982136	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	659	0.11739326387119875	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	589	0.10492356968154182	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT	563	0.10029196898252639	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCAAGCG	35	1.2104465E-7	45.000004	17
GTAACGG	30	2.1635096E-6	45.000004	2
GCTATCG	40	6.8048394E-9	45.0	1
CCATCGA	25	3.888247E-5	45.0	41
GTATGCG	20	7.0302E-4	45.0	1
AATGTCG	20	7.0302E-4	45.0	15
CGTTTTT	22220	0.0	44.46332	1
CGATGAA	540	0.0	42.916668	19
CGAATGC	80	0.0	42.1875	45
CCGATGA	555	0.0	41.351353	18
TACGGCT	430	0.0	41.337208	7
GCGATGC	60	3.6379788E-12	41.250004	9
ATCGAAT	55	6.002665E-11	40.909092	43
GTTTTTT	24415	0.0	40.585705	2
GGCGAAC	50	1.0786607E-9	40.5	32
GATGAAT	590	0.0	40.42373	20
ACCGATG	580	0.0	39.56897	17
ATGAATG	605	0.0	39.421486	21
ACACGAC	40	3.4540062E-7	39.375	26
CACGTGA	40	3.4540062E-7	39.375	43