##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935686.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 779635 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.436273384340105 34.0 31.0 34.0 31.0 34.0 2 32.64866764575731 34.0 31.0 34.0 31.0 34.0 3 32.47594836045072 34.0 31.0 34.0 31.0 34.0 4 36.08750633309177 37.0 35.0 37.0 35.0 37.0 5 36.10659988327871 37.0 35.0 37.0 35.0 37.0 6 36.11378529696589 37.0 36.0 37.0 35.0 37.0 7 36.25963175075516 37.0 37.0 37.0 35.0 37.0 8 36.0666055269453 37.0 37.0 37.0 35.0 37.0 9 37.86583978400149 39.0 38.0 39.0 35.0 39.0 10 37.69136839674976 39.0 38.0 39.0 35.0 39.0 11 37.64578937579765 39.0 37.0 39.0 35.0 39.0 12 37.51929941575224 39.0 37.0 39.0 35.0 39.0 13 37.4965285037229 39.0 37.0 39.0 35.0 39.0 14 38.78749799585704 41.0 38.0 41.0 35.0 41.0 15 38.91633905609676 41.0 38.0 41.0 35.0 41.0 16 38.98983626953638 41.0 39.0 41.0 35.0 41.0 17 38.95181847916012 41.0 38.0 41.0 35.0 41.0 18 38.26697493057649 39.0 38.0 40.0 35.0 41.0 19 37.56658051524111 37.0 37.0 40.0 35.0 41.0 20 36.74351459336741 35.0 35.0 40.0 34.0 41.0 21 36.68695479294798 35.0 35.0 40.0 33.0 41.0 22 36.68352883079903 35.0 35.0 40.0 33.0 41.0 23 36.69909508936874 35.0 35.0 40.0 34.0 41.0 24 36.53617013089458 35.0 35.0 40.0 33.0 41.0 25 36.44773259281587 35.0 35.0 40.0 33.0 41.0 26 36.30677945448832 35.0 35.0 40.0 33.0 41.0 27 36.23597837449576 35.0 35.0 40.0 33.0 41.0 28 36.08756405240914 35.0 35.0 40.0 33.0 41.0 29 35.808541176319686 35.0 35.0 40.0 33.0 41.0 30 35.26119145497572 35.0 35.0 40.0 30.0 41.0 31 34.54630051241927 35.0 35.0 40.0 23.0 41.0 32 33.45099052761869 35.0 33.0 40.0 17.0 41.0 33 32.196298267779156 35.0 31.0 40.0 11.0 41.0 34 31.11339408825925 35.0 25.0 40.0 7.0 41.0 35 30.483957236399085 35.0 23.0 40.0 7.0 41.0 36 30.122253362150236 35.0 21.0 40.0 7.0 41.0 37 29.941458503017436 35.0 21.0 40.0 7.0 41.0 38 29.78531235770585 35.0 20.0 40.0 7.0 41.0 39 29.650217088765896 35.0 19.0 40.0 7.0 41.0 40 29.518897945833626 35.0 18.0 40.0 7.0 41.0 41 29.34050421030354 35.0 18.0 40.0 7.0 41.0 42 29.247184900626575 35.0 18.0 40.0 7.0 41.0 43 29.14840790882913 35.0 18.0 40.0 7.0 41.0 44 29.040447132311915 35.0 18.0 40.0 7.0 41.0 45 28.988966631821302 35.0 18.0 40.0 7.0 41.0 46 28.956869560755994 35.0 18.0 40.0 7.0 41.0 47 28.972337055160427 35.0 18.0 40.0 7.0 41.0 48 28.91466134793846 35.0 18.0 40.0 7.0 41.0 49 28.88197938779044 35.0 18.0 39.0 7.0 41.0 50 28.753099848005796 35.0 18.0 39.0 7.0 41.0 51 28.116820050408204 34.0 18.0 38.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 8.0 9 4.0 10 23.0 11 18.0 12 16.0 13 38.0 14 30.0 15 75.0 16 93.0 17 223.0 18 458.0 19 922.0 20 1551.0 21 2499.0 22 3855.0 23 6614.0 24 13109.0 25 26497.0 26 43946.0 27 51166.0 28 46019.0 29 34924.0 30 27049.0 31 23297.0 32 21875.0 33 25380.0 34 43108.0 35 51520.0 36 50466.0 37 50680.0 38 91022.0 39 163012.0 40 137.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.03248314916596 12.952599613921901 14.698929627325608 47.315987609586536 2 60.30963207141804 14.333887011229615 14.696749119780412 10.65973179757194 3 19.636496565700618 14.686744438102444 54.446247282382146 11.230511713814797 4 17.97969562679972 16.102022100085296 53.97628377381724 11.941998499297748 5 16.072008055051402 17.745226933116136 53.85520147248391 12.327563539348542 6 16.3967754141361 20.63504075625132 53.356763100681725 9.611420728930845 7 49.43210604962579 3.6907014179712303 43.43519723973398 3.4419952926690054 8 50.39614691490249 3.0828528734600167 43.40287442200517 3.118125789632328 9 46.87257498701315 4.142707805575687 44.77890294817446 4.205814259236694 10 26.996992182239126 14.482289789452757 49.12042173581227 9.400296292495849 11 20.162640209841783 15.633341243017565 52.82715629749819 11.37686224964246 12 18.78635515337305 13.986673250944351 54.98380652484817 12.24316507083443 13 16.90957948270665 13.887780820512162 56.18654883374913 13.016090863032058 14 13.312768154328628 15.128617878879218 57.843093242350584 13.715520724441566 15 13.449627069077197 15.430169245865052 58.33627274301436 12.783930942043392 16 16.614826168655846 15.834589262924318 55.9583651324017 11.592219436018137 17 16.23336561339601 15.768276180520372 55.11296953061369 12.88538867546993 18 16.55005226804851 15.528163820249219 55.63988276565316 12.281901146049112 19 15.930403329763287 17.203819736158586 54.403663252675926 12.462113681402194 20 16.31430092286775 17.647488889031408 54.417131093396264 11.621079094704573 21 15.952336670364978 16.823898362695363 55.88025165622375 11.343513310715911 22 15.39964214023229 14.902999480526145 56.64484021368974 13.05251816555183 23 14.825399064947058 15.650785303379145 56.40511264886774 13.118702982806058 24 15.162992939003509 15.508667517492158 55.73851866578591 13.58982087771842 25 15.410544677958276 15.947975655274584 54.31682774631719 14.324651920449954 26 13.974103266272037 16.448851064921406 54.47138725172677 15.105658417079788 27 13.730784277257948 16.021856381511864 55.69708902242716 14.55027031880303 28 13.314948661873826 16.943313217082352 54.63005124192731 15.11168687911651 29 15.060252554079796 17.224726955562538 53.83634649547545 13.87867399488222 30 16.14999326607964 16.048535532653098 53.588666491370965 14.212804709896298 31 16.485406632590895 17.219852879873272 52.08796423967625 14.206776247859576 32 18.068968171003096 18.140796654844895 49.59064177467661 14.199593399475397 33 17.62786432112463 20.220231262064942 47.28674315545095 14.865161261359482 34 16.735780204839443 21.54187536475402 46.38285864539176 15.339485785014784 35 16.9612703380428 24.141168623779077 43.27358315108994 15.62397788708819 36 18.814573486310902 25.34429572812919 40.4611132132344 15.38001757232551 37 18.637695844850473 25.501677066832556 40.188421504935 15.672205583381968 38 18.673610086771376 25.441905507064206 40.430073047002764 15.45441135916166 39 18.771091600556673 24.15514952509828 39.899440122621485 17.174318751723565 40 19.70447709505089 23.52472631423679 40.38838687334458 16.382409717367743 41 18.020355679260167 24.307143727513516 39.73705644307913 17.935444150147184 42 18.63500227670641 24.23659789516889 39.47770431035036 17.65069551777434 43 18.37013474253978 23.740340030911902 39.76668569266387 18.122839533884445 44 18.784174645827857 23.635162608143553 39.124846883477524 18.455815862551063 45 18.373341371282713 23.34271806678766 39.391766660039636 18.892173901889986 46 17.62016841214158 23.722254644801737 40.17200356577116 18.485573377285526 47 16.898548679830945 23.33835705169727 41.70643955184157 18.05665471663022 48 16.77644025729989 23.012307041115392 42.30684871766917 17.90440398391555 49 17.974308490511586 22.51720356320586 41.795199035446075 17.713288910836482 50 16.53209514708806 22.30146158138103 42.33391266425956 18.83253060727135 51 16.193988212432743 22.621867925375337 41.734273089330266 19.44987077286166 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 207.0 1 470.0 2 733.0 3 49564.5 4 98396.0 5 64428.5 6 30461.0 7 29010.5 8 27560.0 9 26781.0 10 26002.0 11 25029.0 12 24056.0 13 22580.5 14 21105.0 15 19645.5 16 18186.0 17 16532.0 18 14878.0 19 13540.5 20 12203.0 21 11129.5 22 10056.0 23 9425.0 24 8794.0 25 8427.0 26 7962.5 27 7865.0 28 8115.0 29 8365.0 30 9069.0 31 9773.0 32 10801.0 33 11829.0 34 13024.0 35 14219.0 36 15267.0 37 16315.0 38 17377.0 39 18439.0 40 19603.5 41 20768.0 42 22276.0 43 23784.0 44 25718.0 45 27652.0 46 31775.0 47 35898.0 48 38526.0 49 41154.0 50 42138.0 51 43122.0 52 39736.5 53 36351.0 54 33616.0 55 30881.0 56 29187.5 57 27494.0 58 26857.5 59 26221.0 60 23954.0 61 21687.0 62 19826.0 63 17965.0 64 15923.5 65 13882.0 66 11567.5 67 9253.0 68 8036.5 69 6820.0 70 5465.0 71 4110.0 72 3204.0 73 2298.0 74 1848.0 75 1086.5 76 775.0 77 532.5 78 290.0 79 231.5 80 173.0 81 139.0 82 105.0 83 65.5 84 26.0 85 18.0 86 10.0 87 8.5 88 7.0 89 6.5 90 6.0 91 4.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 779635.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.7394442346346 #Duplication Level Percentage of deduplicated Percentage of total 1 79.15653406753968 34.62262807654105 2 7.23028918934011 6.3249766159484615 3 2.969305435609703 3.8962730854934393 4 1.8669055753878863 3.266296492240275 5 1.3669898781429666 2.9895688772172115 6 1.1151993071644513 2.926691874373359 7 0.9151717191652132 2.802037166287906 8 0.8265536541804586 2.8922397971167695 9 0.6913414443597088 2.72150014973969 >10 3.7611281487548665 24.055958944725358 >50 0.052065781707545035 1.5779553467662182 >100 0.04407837803942469 3.4888380411071513 >500 0.0035499364863837805 1.0430413325411396 >1k 5.916560810639634E-4 0.27741975151571807 >5k 0.0 0.0 >10k+ 2.958280405319817E-4 7.114574448386307 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 54984 7.052530992066801 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 1131 0.14506788433048798 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 1013 0.12993259666382345 No Hit CGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTG 941 0.12069750588416374 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 872 0.11184721055365653 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.695908983049761E-4 0.0 0.0 0.05553880982767577 0.0 2 7.695908983049761E-4 0.0 0.0 0.22215523931070308 0.0 3 7.695908983049761E-4 0.0 0.0 0.42494244101406425 0.0 4 7.695908983049761E-4 0.0 0.0 0.625549135172228 0.0 5 7.695908983049761E-4 0.0 0.0 1.1146241510450403 0.0 6 7.695908983049761E-4 0.0 0.0 1.6559030828528734 0.0 7 7.695908983049761E-4 0.0 0.0 2.0828977662624175 0.0 8 7.695908983049761E-4 0.0 0.0 2.668428174722787 0.0 9 7.695908983049761E-4 0.0 0.0 3.0337273211182154 0.0 10 7.695908983049761E-4 0.0 0.0 3.5292155944769026 0.0 11 7.695908983049761E-4 0.0 0.0 4.1010216319175 0.0 12 7.695908983049761E-4 0.0 0.0 4.520063876044559 0.0 13 0.0010261211977399681 0.0 0.0 4.712333335471086 0.0 14 0.0010261211977399681 0.0 0.0 4.847781333572762 0.0 15 0.0010261211977399681 0.0 0.0 4.984383718021895 0.0 16 0.0011543863474574641 0.0 0.0 5.2162871087111276 0.0 17 0.0011543863474574641 0.0 0.0 5.461658340120698 0.0 18 0.0011543863474574641 0.0 0.0 5.746150442194104 0.0 19 0.0011543863474574641 0.0 0.0 5.932519704733625 0.0 20 0.0011543863474574641 0.0 0.0 6.136974353383314 0.0 21 0.0011543863474574641 0.0 0.0 6.381960789343731 0.0 22 0.0011543863474574641 0.0 0.0 6.632719157041436 0.0 23 0.0011543863474574641 0.0 0.0 6.877962123301288 0.0 24 0.0011543863474574641 0.0 0.0 7.086649521891655 0.0 25 0.0011543863474574641 0.0 0.0 7.285203973654339 0.0 26 0.0011543863474574641 0.0 0.0 7.47670384218256 0.0 27 0.0011543863474574641 0.0 0.0 7.7119421267644475 0.0 28 0.0011543863474574641 0.0 0.0 7.905622502837867 0.0 29 0.0011543863474574641 0.0 0.0 8.116362143823713 0.0 30 0.0011543863474574641 0.0 0.0 8.390721299069437 0.0 31 0.0012826514971749602 0.0 0.0 8.598767371911215 0.0 32 0.0012826514971749602 0.0 0.0 8.809378747747344 0.0 33 0.0014109166468924562 0.0 0.0 9.024735934123019 0.0 34 0.0014109166468924562 0.0 0.0 9.240990976546717 0.0 35 0.0014109166468924562 0.0 0.0 9.48315557921335 0.0 36 0.0014109166468924562 0.0 0.0 9.706593470021227 0.0 37 0.0014109166468924562 0.0 0.0 9.941446959153962 0.0 38 0.0014109166468924562 0.0 0.0 10.25505525021324 0.0 39 0.0014109166468924562 0.0 0.0 10.720529478538033 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATATGCG 25 3.889647E-5 45.0 1 CGAATCC 20 7.031889E-4 45.0 19 GCGATTC 20 7.031889E-4 45.0 9 CACGTCA 25 3.889647E-5 45.0 34 ACGAAAC 20 7.031889E-4 45.0 29 CGTTTTT 30350 0.0 44.525536 1 GTTTTTT 33725 0.0 40.249817 2 TAGACGG 40 3.4563163E-7 39.375 2 GTCGAAG 30 1.139585E-4 37.499996 1 CCATACG 30 1.139585E-4 37.499996 2 ACAACGA 115 0.0 37.173916 13 GCTACGA 85 0.0 37.058823 10 TGACGGC 25 0.0021066936 36.0 14 TCGATAG 25 0.0021066936 36.0 1 GCTTCGA 25 0.0021066936 36.0 24 ACGCTGG 25 0.0021066936 36.0 2 ACTCGCT 25 0.0021066936 36.0 41 GTGCCGT 50 4.8754373E-8 36.0 42 GGCGATT 195 0.0 35.76923 8 AGGGATG 485 0.0 35.72165 6 >>END_MODULE