FastQCFastQC Report
Sat 14 Jan 2017
SRR2935684.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935684.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences702325
Sequences flagged as poor quality0
Sequence length51
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT426096.066849393087246No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG11690.16644715765493184No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10020.14266899227565585No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA8570.12202327982059587No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA7470.10636101519951588No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTT7440.1059338625280319No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC7290.10379809917061189No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC7090.1009504146940519No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATTC207.03141E-445.00000427
CTAACGG207.03141E-445.0000042
GCGATAT207.03141E-445.0000049
AACCCGC253.889252E-544.99999621
CGTTTTT260550.044.5768551
CACGAGG451.9264917E-840.02
GTTTTTT291850.039.911772
ATTTGCG356.244818E-638.571431
AGCCGCA301.1394701E-437.49999628
CCATACG301.1394701E-437.4999962
CTTGACG301.1394701E-437.4999961
CGGTCTA301.1394701E-437.49999631
ATTCTCG301.1394701E-437.49999630
CCCGCAT301.1394701E-437.49999623
TTCTCGT301.1394701E-437.49999631
ATTAGCG250.002106552235.9999961
CGACGGT250.002106552235.99999628
CAACGAC250.002106552235.99999612
TAACGCC250.002106552235.99999612
TAACGAG504.874346E-835.9999961