Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935684.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 702325 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 34 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 42609 | 6.066849393087246 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG | 1169 | 0.16644715765493184 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA | 1002 | 0.14266899227565585 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA | 857 | 0.12202327982059587 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA | 747 | 0.10636101519951588 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTT | 744 | 0.1059338625280319 | No Hit |
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC | 729 | 0.10379809917061189 | No Hit |
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC | 709 | 0.1009504146940519 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCATTC | 20 | 7.03141E-4 | 45.000004 | 27 |
CTAACGG | 20 | 7.03141E-4 | 45.000004 | 2 |
GCGATAT | 20 | 7.03141E-4 | 45.000004 | 9 |
AACCCGC | 25 | 3.889252E-5 | 44.999996 | 21 |
CGTTTTT | 26055 | 0.0 | 44.576855 | 1 |
CACGAGG | 45 | 1.9264917E-8 | 40.0 | 2 |
GTTTTTT | 29185 | 0.0 | 39.91177 | 2 |
ATTTGCG | 35 | 6.244818E-6 | 38.57143 | 1 |
AGCCGCA | 30 | 1.1394701E-4 | 37.499996 | 28 |
CCATACG | 30 | 1.1394701E-4 | 37.499996 | 2 |
CTTGACG | 30 | 1.1394701E-4 | 37.499996 | 1 |
CGGTCTA | 30 | 1.1394701E-4 | 37.499996 | 31 |
ATTCTCG | 30 | 1.1394701E-4 | 37.499996 | 30 |
CCCGCAT | 30 | 1.1394701E-4 | 37.499996 | 23 |
TTCTCGT | 30 | 1.1394701E-4 | 37.499996 | 31 |
ATTAGCG | 25 | 0.0021065522 | 35.999996 | 1 |
CGACGGT | 25 | 0.0021065522 | 35.999996 | 28 |
CAACGAC | 25 | 0.0021065522 | 35.999996 | 12 |
TAACGCC | 25 | 0.0021065522 | 35.999996 | 12 |
TAACGAG | 50 | 4.874346E-8 | 35.999996 | 1 |