SRR2935684.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935684.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	702325
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42609	6.066849393087246	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG	1169	0.16644715765493184	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1002	0.14266899227565585	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	857	0.12202327982059587	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	747	0.10636101519951588	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTT	744	0.1059338625280319	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	729	0.10379809917061189	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	709	0.1009504146940519	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATTC	20	7.03141E-4	45.000004	27
CTAACGG	20	7.03141E-4	45.000004	2
GCGATAT	20	7.03141E-4	45.000004	9
AACCCGC	25	3.889252E-5	44.999996	21
CGTTTTT	26055	0.0	44.576855	1
CACGAGG	45	1.9264917E-8	40.0	2
GTTTTTT	29185	0.0	39.91177	2
ATTTGCG	35	6.244818E-6	38.57143	1
AGCCGCA	30	1.1394701E-4	37.499996	28
CCATACG	30	1.1394701E-4	37.499996	2
CTTGACG	30	1.1394701E-4	37.499996	1
CGGTCTA	30	1.1394701E-4	37.499996	31
ATTCTCG	30	1.1394701E-4	37.499996	30
CCCGCAT	30	1.1394701E-4	37.499996	23
TTCTCGT	30	1.1394701E-4	37.499996	31
ATTAGCG	25	0.0021065522	35.999996	1
CGACGGT	25	0.0021065522	35.999996	28
CAACGAC	25	0.0021065522	35.999996	12
TAACGCC	25	0.0021065522	35.999996	12
TAACGAG	50	4.874346E-8	35.999996	1