SRR2935683.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935683.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	414346
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29765	7.183609833327702	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	816	0.19693685953285417	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	762	0.18390427324023884	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	618	0.14915070979326456	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	572	0.1380488770254811	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	520	0.12549897911407376	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	460	0.11101832767783447	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	449	0.1083635415811906	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGAGC	20	7.028057E-4	45.000004	29
TGTCACG	25	3.8864717E-5	45.000004	1
GTCGAGG	25	3.8864717E-5	45.000004	2
TTGTGCG	20	7.028057E-4	45.000004	1
CGCATTA	20	7.028057E-4	45.000004	24
CCTACTC	20	7.028057E-4	45.000004	12
ACGGGTA	20	7.028057E-4	45.000004	5
CTCGATC	20	7.028057E-4	45.000004	16
TAATGCG	20	7.028057E-4	45.000004	1
TACACGG	25	3.8864717E-5	45.000004	2
TGCGTAG	25	3.8864717E-5	45.000004	1
CGTTTTT	16305	0.0	44.530823	1
GTTTTTT	18080	0.0	40.33324	2
TCGTGAG	45	1.9232175E-8	40.000004	1
GGCATAG	45	1.9232175E-8	40.000004	1
GTACTAC	40	3.4510776E-7	39.375004	41
CGAGGGA	115	0.0	39.130432	4
TCGTTGA	35	6.238619E-6	38.57143	24
TATGGTG	35	6.238619E-6	38.57143	43
ATTAATC	35	6.238619E-6	38.57143	19