SRR2935682.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935682.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	792651
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	59205	7.469239299515171	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1160	0.1463443558388244	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	942	0.1188417096553212	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	845	0.10660429369293674	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	834	0.10521654549101685	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	794	0.10017018839312634	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAG	20	7.0319587E-4	45.000004	1
CGTAGCG	20	7.0319587E-4	45.000004	1
TCGTACA	20	7.0319587E-4	45.000004	34
CGGTCTA	40	6.8102963E-9	45.000004	31
CGTAAGG	50	2.1827873E-11	45.0	2
CGTTTTT	30005	0.0	44.47509	1
GGCGATA	125	0.0	41.399998	8
TAGTAGG	100	0.0	40.5	2
GTTTTTT	33160	0.0	40.38601	2
TTACACG	180	0.0	38.75	34
ATTACGG	35	6.2458366E-6	38.571426	2
ATGACGG	35	6.2458366E-6	38.571426	2
CGATAGC	35	6.2458366E-6	38.571426	10
ATGGGCG	155	0.0	37.741936	5
CCATACG	30	1.1396024E-4	37.499996	2
CCCTCGT	55	2.746674E-9	36.81818	14
GCTACGA	55	2.746674E-9	36.81818	10
TGGGCGA	245	0.0	36.734695	6
TGCGGGT	105	0.0	36.42857	4
TCACGAC	50	4.8756192E-8	36.0	25