SRR2935680.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935680.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	325191
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24314	7.476836689822289	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	563	0.1731290226359278	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	531	0.16328865189996034	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	472	0.14514546835552028	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	468	0.14391542201352436	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	447	0.1374576787180457	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	400	0.12300463419959347	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA	350	0.1076290549246443	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT	327	0.10055628845816765	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	55	1.8189894E-12	45.0	5
ATGGATT	20	7.025817E-4	45.0	18
AATGGTC	20	7.025817E-4	45.0	16
TACGGGT	20	7.025817E-4	45.0	4
TAGGGTC	25	3.8846156E-5	45.0	5
ATCCAAT	20	7.025817E-4	45.0	28
GGCGATT	75	0.0	45.0	8
ATCATCC	20	7.025817E-4	45.0	28
TCGCGCG	20	7.025817E-4	45.0	1
CGCTTGG	20	7.025817E-4	45.0	2
CTTACGG	20	7.025817E-4	45.0	2
TACCGGG	20	7.025817E-4	45.0	3
CGTTTTT	12855	0.0	44.597435	1
CGAATAT	55	6.002665E-11	40.909092	14
GTTTTTT	14265	0.0	40.536278	2
ACGGGCT	50	1.0768417E-9	40.5	5
ACGGGAT	50	1.0768417E-9	40.5	5
GCGATTG	50	1.0768417E-9	40.5	9
ATAGGGA	110	0.0	38.863636	4
TACGAGG	35	6.234477E-6	38.571426	2