FastQCFastQC Report
Sat 14 Jan 2017
SRR2935680.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935680.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences325191
Sequences flagged as poor quality0
Sequence length51
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT243147.476836689822289No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC5630.1731290226359278No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA5310.16328865189996034No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA4720.14514546835552028No Hit
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC4680.14391542201352436No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA4470.1374576787180457No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA4000.12300463419959347No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA3500.1076290549246443No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT3270.10055628845816765No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGGGCG551.8189894E-1245.05
ATGGATT207.025817E-445.018
AATGGTC207.025817E-445.016
TACGGGT207.025817E-445.04
TAGGGTC253.8846156E-545.05
ATCCAAT207.025817E-445.028
GGCGATT750.045.08
ATCATCC207.025817E-445.028
TCGCGCG207.025817E-445.01
CGCTTGG207.025817E-445.02
CTTACGG207.025817E-445.02
TACCGGG207.025817E-445.03
CGTTTTT128550.044.5974351
CGAATAT556.002665E-1140.90909214
GTTTTTT142650.040.5362782
ACGGGCT501.0768417E-940.55
ACGGGAT501.0768417E-940.55
GCGATTG501.0768417E-940.59
ATAGGGA1100.038.8636364
TACGAGG356.234477E-638.5714262