Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935680.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 325191 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 34 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 24314 | 7.476836689822289 | No Hit |
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC | 563 | 0.1731290226359278 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA | 531 | 0.16328865189996034 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA | 472 | 0.14514546835552028 | No Hit |
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC | 468 | 0.14391542201352436 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA | 447 | 0.1374576787180457 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA | 400 | 0.12300463419959347 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA | 350 | 0.1076290549246443 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT | 327 | 0.10055628845816765 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATGGGCG | 55 | 1.8189894E-12 | 45.0 | 5 |
ATGGATT | 20 | 7.025817E-4 | 45.0 | 18 |
AATGGTC | 20 | 7.025817E-4 | 45.0 | 16 |
TACGGGT | 20 | 7.025817E-4 | 45.0 | 4 |
TAGGGTC | 25 | 3.8846156E-5 | 45.0 | 5 |
ATCCAAT | 20 | 7.025817E-4 | 45.0 | 28 |
GGCGATT | 75 | 0.0 | 45.0 | 8 |
ATCATCC | 20 | 7.025817E-4 | 45.0 | 28 |
TCGCGCG | 20 | 7.025817E-4 | 45.0 | 1 |
CGCTTGG | 20 | 7.025817E-4 | 45.0 | 2 |
CTTACGG | 20 | 7.025817E-4 | 45.0 | 2 |
TACCGGG | 20 | 7.025817E-4 | 45.0 | 3 |
CGTTTTT | 12855 | 0.0 | 44.597435 | 1 |
CGAATAT | 55 | 6.002665E-11 | 40.909092 | 14 |
GTTTTTT | 14265 | 0.0 | 40.536278 | 2 |
ACGGGCT | 50 | 1.0768417E-9 | 40.5 | 5 |
ACGGGAT | 50 | 1.0768417E-9 | 40.5 | 5 |
GCGATTG | 50 | 1.0768417E-9 | 40.5 | 9 |
ATAGGGA | 110 | 0.0 | 38.863636 | 4 |
TACGAGG | 35 | 6.234477E-6 | 38.571426 | 2 |