SRR2935678.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935678.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	539021
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40931	7.59358169718805	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	767	0.14229501262474004	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	763	0.14155292650935677	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	696	0.12912298407668718	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	636	0.11799169234593827	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	617	0.1144667832978678	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGA	20	7.02995E-4	45.0	15
GCACGAA	20	7.02995E-4	45.0	34
ATCGTAG	20	7.02995E-4	45.0	15
ATATCGT	20	7.02995E-4	45.0	13
ATGACCG	20	7.02995E-4	45.0	18
GACGATA	25	3.88804E-5	45.0	9
TATCGTA	20	7.02995E-4	45.0	14
CGATATC	20	7.02995E-4	45.0	11
GCGTAAG	25	3.88804E-5	45.0	1
TACCGGT	20	7.02995E-4	45.0	40
CGTTTTT	20350	0.0	44.668304	1
CTACGAA	115	0.0	43.043476	11
TACGAAT	115	0.0	43.043476	12
GCTACGA	120	0.0	41.249996	10
GTTTTTT	22180	0.0	41.145176	2
ACGGGCC	55	6.002665E-11	40.909092	5
ATAGTAG	45	1.9250365E-8	40.000004	1
TCTACGG	40	3.4536606E-7	39.375	2
GACGGTC	40	3.4536606E-7	39.375	29
CGGTCTA	40	3.4536606E-7	39.375	31