SRR2935676.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935676.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	344452
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25152	7.302033374751779	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	560	0.16257707895439713	No Hit
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	504	0.14631937105895743	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	451	0.1309326118007734	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	424	0.12309407406547211	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	411	0.11931996330403075	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGC	393	0.11409427148049654	No Hit
CCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC	369	0.10712668238245096	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGGC	25	3.885098E-5	45.000004	4
ACGCATG	25	3.885098E-5	45.000004	1
GTCTCAC	25	3.885098E-5	45.000004	22
GGATCGC	25	3.885098E-5	45.000004	8
GGTCCGC	20	7.0264004E-4	45.0	9
ACGGGCG	20	7.0264004E-4	45.0	5
TCGGCGT	20	7.0264004E-4	45.0	4
CGTAGCG	20	7.0264004E-4	45.0	1
GCGGCTA	20	7.0264004E-4	45.0	24
GCAATCC	20	7.0264004E-4	45.0	35
CAATCCC	20	7.0264004E-4	45.0	36
GTAACGG	20	7.0264004E-4	45.0	2
CGTTTTT	13585	0.0	44.486565	1
GTTTTTT	15045	0.0	40.348953	2
CGGGCTT	45	1.9215804E-8	40.0	6
CAATTGG	40	3.448822E-7	39.375	2
CTAGGGT	40	3.448822E-7	39.375	4
TACGAGG	35	6.2355575E-6	38.571426	2
CATAAGG	35	6.2355575E-6	38.571426	2
TAGGGAG	190	0.0	37.894737	5