SRR2935674.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935674.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	307271
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21108	6.869506071187974	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGC	3297	1.0729941973046595	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTC	3015	0.9812185334769633	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCG	1959	0.6375479625477185	No Hit
GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	1089	0.35441027627078375	TruSeq Adapter, Index 15 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTT	797	0.25938015627898503	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACAGGTAT	779	0.2535221351836002	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCT	577	0.18778212066872565	No Hit
CCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	572	0.1861548925866743	TruSeq Adapter, Index 15 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCT	484	0.15751567834257058	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	468	0.15230854848000625	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTC	452	0.14710141861744191	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACAGGTATCGTA	411	0.13375814834462085	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	393	0.12790012724923602	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	380	0.12366933423590251	No Hit
CTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGCT	375	0.12204210615385117	TruSeq Adapter, Index 21 (95% over 23bp)

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGGCA	45	3.8198777E-10	45.000004	5
CGCACGG	35	1.2080454E-7	45.000004	2
TGCACGG	30	2.1602918E-6	45.000004	2
TGGACGG	25	3.8841128E-5	45.0	2
TACGGCC	20	7.025211E-4	45.0	7
ACGGGTC	20	7.025211E-4	45.0	5
CCTCGAT	20	7.025211E-4	45.0	15
TACGCGG	20	7.025211E-4	45.0	2
TACGAAT	20	7.025211E-4	45.0	12
CGAATAT	20	7.025211E-4	45.0	14
TCGTAAG	20	7.025211E-4	45.0	42
GCTACGG	25	3.8841128E-5	45.0	2
AGCTACG	20	7.025211E-4	45.0	9
ATGGGCT	55	1.8189894E-12	44.999996	5
CGTTTTT	11415	0.0	44.36925	1
GATGAAT	475	0.0	44.05263	20
ATGAATG	470	0.0	43.085106	21
CGATGAA	510	0.0	42.35294	19
CCGATGA	505	0.0	42.326733	18
ACCGATG	505	0.0	42.326733	17