##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935670.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 156329 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.28805276052428 33.0 31.0 34.0 30.0 34.0 2 32.4862309616258 34.0 31.0 34.0 30.0 34.0 3 32.36819144240672 34.0 31.0 34.0 30.0 34.0 4 36.00773368984641 37.0 35.0 37.0 35.0 37.0 5 36.03417791964383 37.0 35.0 37.0 35.0 37.0 6 36.04748319249787 37.0 35.0 37.0 35.0 37.0 7 36.19544678210697 37.0 37.0 37.0 35.0 37.0 8 35.87307537309137 37.0 36.0 37.0 35.0 37.0 9 37.79308381682222 39.0 38.0 39.0 35.0 39.0 10 37.62000652470111 39.0 37.0 39.0 35.0 39.0 11 37.594943996315465 39.0 37.0 39.0 35.0 39.0 12 37.510832922874194 39.0 37.0 39.0 35.0 39.0 13 37.41965981999501 39.0 37.0 39.0 35.0 39.0 14 38.76715772505421 40.0 38.0 41.0 35.0 41.0 15 38.85142871764036 41.0 38.0 41.0 35.0 41.0 16 38.98480128447057 41.0 38.0 41.0 35.0 41.0 17 38.91879945499556 41.0 38.0 41.0 35.0 41.0 18 38.33240793454829 39.0 38.0 40.0 35.0 41.0 19 37.67496753641359 37.0 37.0 40.0 35.0 41.0 20 36.84626652764362 36.0 35.0 40.0 34.0 41.0 21 36.85944386518177 36.0 35.0 40.0 34.0 41.0 22 36.85248418399657 36.0 35.0 40.0 34.0 41.0 23 36.824677443084774 36.0 35.0 40.0 34.0 41.0 24 36.68605952830249 36.0 35.0 40.0 34.0 41.0 25 36.657235701629254 36.0 35.0 40.0 33.0 41.0 26 36.48326925906262 35.0 35.0 40.0 33.0 41.0 27 36.3662084450102 35.0 35.0 40.0 33.0 41.0 28 36.22505101420722 35.0 35.0 40.0 33.0 41.0 29 35.992227929558815 36.0 35.0 40.0 33.0 41.0 30 35.51371786424784 36.0 35.0 40.0 31.0 41.0 31 34.86324354406412 35.0 35.0 40.0 25.0 41.0 32 33.77688080906294 35.0 34.0 40.0 18.0 41.0 33 32.67285660370117 35.0 33.0 40.0 12.0 41.0 34 31.77453959278189 35.0 30.0 40.0 8.0 41.0 35 31.27356408599812 35.0 27.0 40.0 7.0 41.0 36 30.938623032194922 35.0 24.0 40.0 7.0 41.0 37 30.770093840554217 35.0 23.0 40.0 7.0 41.0 38 30.648951889924454 35.0 23.0 40.0 7.0 41.0 39 30.536029783341544 35.0 23.0 40.0 7.0 41.0 40 30.442349148270633 35.0 23.0 40.0 7.0 41.0 41 30.248789412073254 35.0 22.0 40.0 7.0 41.0 42 30.130161390401014 35.0 21.0 40.0 7.0 41.0 43 30.003614172674297 35.0 21.0 40.0 7.0 41.0 44 29.892425589621887 35.0 20.0 40.0 7.0 41.0 45 29.828860927914846 35.0 20.0 40.0 7.0 41.0 46 29.81103953840938 35.0 20.0 40.0 7.0 41.0 47 29.771494732263367 35.0 20.0 40.0 7.0 41.0 48 29.76397853245399 35.0 20.0 40.0 7.0 41.0 49 29.75332791740496 35.0 20.0 40.0 7.0 41.0 50 29.600797037018083 35.0 20.0 40.0 7.0 41.0 51 28.962387017124144 35.0 20.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 1.0 10 2.0 11 1.0 12 1.0 13 3.0 14 2.0 15 5.0 16 18.0 17 25.0 18 61.0 19 138.0 20 257.0 21 441.0 22 738.0 23 1347.0 24 2610.0 25 5063.0 26 8428.0 27 9609.0 28 8378.0 29 6128.0 30 4726.0 31 3972.0 32 3956.0 33 4645.0 34 7504.0 35 11937.0 36 10777.0 37 10596.0 38 19309.0 39 35614.0 40 34.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.9818267883758 12.955369765046793 15.01960608716233 43.04319735941508 2 54.306622571627784 18.48473411842972 15.61514498269675 11.593498327245745 3 19.311835935750885 18.428442579431838 51.08329228741948 11.176429197397795 4 18.005616360368197 15.4641813099297 54.51579681313128 12.014405516570822 5 18.53079083215526 17.445259676707455 50.524854633497306 13.499094857639976 6 15.78082121679279 23.917507308304923 50.25299208720071 10.04867938770158 7 48.00772729308062 3.8207882094812864 44.01294705396951 4.158537443468583 8 47.35461750538927 6.092279743361757 41.47535006300814 5.0777526882408255 9 45.02939313882901 4.086893666562187 42.483480352333856 8.400232842274946 10 27.24318584523665 14.423427515048392 47.54716015582521 10.786226483889745 11 21.067108469957592 15.179525232042678 50.85236904221225 12.900997255787475 12 18.25445054980202 13.53171836319557 53.43922112979678 14.774609957205637 13 15.820481164723116 16.05588214598699 55.222639433502415 12.900997255787475 14 11.980502657856187 20.781812715491046 52.61403834221417 14.623646284438587 15 10.62310895611179 16.05588214598699 59.72788158307159 13.593127314829623 16 12.223579758074319 16.026457023329005 55.323708333066804 16.426254885529875 17 12.130826654043716 16.746732851870092 53.8972295607341 17.2252109333521 18 13.156867887596032 16.08082953258832 55.115173768142824 15.647128811672816 19 14.063929277357367 17.37361589980106 52.62811122696365 15.934343595877923 20 15.51983317234806 17.458692884877404 53.84605543437239 13.175418508402151 21 14.010836121257093 19.068758835532755 53.58314836018909 13.337256683021065 22 12.473053624087662 16.030934759385655 53.31832225626724 18.177689360259453 23 12.814640917552087 17.988984769300643 53.315763549949146 15.880610763198128 24 14.809152492499791 15.73476450306725 53.01191717467648 16.444165829756475 25 12.323369304479655 18.918434839345228 52.090143223586146 16.66805263258896 26 12.32976607027487 17.481721241740175 54.24265491367565 15.94585777430931 27 15.293387663197489 18.10156784729641 51.98587594112417 14.61916854838194 28 11.116299598922785 18.020968598276713 55.6972794555073 15.16545234729321 29 12.77498096962176 16.3283843688631 54.75887391334942 16.13776074816573 30 15.040715414286538 17.848895598385457 51.7114546885095 15.398934298818517 31 14.237281630407667 17.958280293483615 50.9316889380729 16.872749138035807 32 15.877412380300521 20.47476795732078 47.22348380658739 16.424335855791313 33 15.890205911890948 19.289447255467636 43.58692245200827 21.23342438063315 34 14.401678511344665 20.42551286069763 46.04008213447281 19.132726493484896 35 15.943938744570746 21.070946529434718 40.91819176224501 22.066922963749526 36 17.506668628341508 21.610833562550773 41.644864356581316 19.237633452526403 37 16.968060948384498 23.284867171158265 42.055536720634045 17.691535159823193 38 15.633055926923348 24.612196073665153 37.94241631431149 21.812331685100013 39 16.437769063961262 23.909831189350665 40.41028855810502 19.242111188583053 40 17.133737182480537 21.953700209174244 39.656749547428824 21.255813060916402 41 15.741800945441984 22.970785970613257 38.054999392307245 23.232413691637507 42 17.168919394354216 21.99975692289978 38.98572881551088 21.84559486723513 43 18.7591553710444 22.167991863313908 37.88548509873408 21.187367666907612 44 17.154206833025224 23.227296279001337 38.307031964638675 21.31146492333476 45 16.903453613852836 22.819182621266688 38.12344478631604 22.153918978564437 46 19.17622450089235 22.97654305982895 38.31598743675198 19.531245002526724 47 14.866083708077197 21.652412540219665 43.05151315494886 20.42999059675428 48 16.259299298274794 21.048557849151468 40.56572996692872 22.126412885645017 49 16.39043299707668 19.178783207210433 43.31953764176832 21.111246153944567 50 16.14863525001759 19.884346474422532 41.3845159887161 22.582502286843773 51 15.333687287707335 20.307812370065694 38.87698379699224 25.48151654523473 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 75.0 1 108.0 2 141.0 3 7900.5 4 15660.0 5 10291.5 6 4923.0 7 4925.5 8 4928.0 9 4953.0 10 4978.0 11 4859.0 12 4740.0 13 4480.0 14 4220.0 15 3979.5 16 3739.0 17 3417.5 18 3096.0 19 2762.5 20 2429.0 21 2180.5 22 1932.0 23 1708.0 24 1484.0 25 1389.5 26 1335.0 27 1375.0 28 1354.0 29 1333.0 30 1357.5 31 1382.0 32 1665.5 33 1949.0 34 2082.5 35 2216.0 36 2392.0 37 2568.0 38 2837.0 39 3106.0 40 3567.5 41 4029.0 42 4911.0 43 5793.0 44 6803.5 45 7814.0 46 11193.0 47 14572.0 48 13991.0 49 13410.0 50 13026.0 51 12642.0 52 10444.0 53 8246.0 54 7018.5 55 5791.0 56 5036.0 57 4281.0 58 3651.5 59 3022.0 60 2961.5 61 2901.0 62 2528.0 63 2155.0 64 1868.5 65 1582.0 66 1311.5 67 1041.0 68 820.5 69 600.0 70 492.0 71 384.0 72 293.5 73 203.0 74 178.5 75 100.0 76 46.0 77 47.5 78 49.0 79 32.0 80 15.0 81 8.5 82 2.0 83 14.5 84 27.0 85 13.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 156329.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.622910656372134 #Duplication Level Percentage of deduplicated Percentage of total 1 81.63067998710925 40.50751939819228 2 7.831131163390268 7.772070441184938 3 2.67869803416049 3.98774379673637 4 1.4308733483725427 2.8401640130749892 5 0.9384466645182082 2.328422749457874 6 0.8005156300354496 2.383434935296714 7 0.6432484692233322 2.234390292268229 8 0.6071543667418627 2.4103013516366127 9 0.5078955849178214 2.268293150982863 >10 2.8565903963905894 20.528500790000574 >50 0.04640670319046084 1.5435395863851236 >100 0.020625201417982596 2.000268664163399 >500 0.0025781501772478245 0.9128184789770292 >1k 0.003867225265871737 2.274689916778077 >5k 0.0012890750886239122 6.007842434864933 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9392 6.007842434864933 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGC 1317 0.8424540552296758 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCG 1176 0.7522596575171593 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTC 1063 0.6799762040312418 No Hit GCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC 893 0.5712311855126049 TruSeq Adapter, Index 23 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC 534 0.3415872934644244 TruSeq Adapter, Index 23 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGCT 385 0.24627548311573672 TruSeq Adapter, Index 20 (95% over 23bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTACTCCT 305 0.19510135675402518 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCT 265 0.1695142935731694 No Hit TCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC 217 0.13880981775614248 TruSeq Adapter, Index 23 (95% over 22bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTA 207 0.13241305196092854 No Hit CGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTG 191 0.12217822668858624 TruSeq Adapter, Index 20 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC 189 0.12089887352954345 TruSeq Adapter, Index 20 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTC 186 0.11897984379097928 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 173 0.11066404825720115 No Hit GAACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCT 172 0.11002437167767977 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCC 164 0.10490695904150861 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 163 0.10426728246198723 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2539516020699934 0.0 2 0.0 0.0 0.0 1.469337103160642 0.0 3 0.0 0.0 0.0 2.0060257533790917 0.0 4 0.0 0.0 0.0 2.701993871898368 0.0 5 0.0 0.0 0.0 4.842351706976952 0.0 6 0.0 0.0 0.0 5.589493951857941 0.0 7 0.0 0.0 0.0 6.545810438242425 0.0 8 0.0 0.0 0.0 7.871859987590274 0.0 9 0.0 0.0 0.0 8.306200385085301 0.0 10 0.0 0.0 0.0 10.00326235055556 0.0 11 0.0 0.0 0.0 11.413109531820712 0.0 12 0.0 0.0 0.0 13.344293125395799 0.0 13 0.0 0.0 0.0 13.864350184546693 0.0 14 0.0 0.0 0.0 14.077362485527317 0.0 15 0.0 0.0 0.0 14.540488329100807 0.0 16 0.0 0.0 0.0 15.297865399254137 0.0 17 0.0 0.0 0.0 16.072513737054546 0.0 18 0.0 0.0 0.0 17.01539701526908 0.0 19 0.0 0.0 0.0 17.757421847513896 0.0 20 0.0 0.0 0.0 18.324814973549373 0.0 21 0.0 0.0 0.0 18.96193284675268 0.0 22 0.0 0.0 0.0 19.59393330731982 0.0 23 0.0 0.0 0.0 20.25471921396542 0.0 24 0.0 0.0 0.0 20.766460477582534 0.0 25 0.0 0.0 0.0 21.179691547953354 0.0 26 0.0 0.0 0.0 21.56349749566619 0.0 27 0.0 0.0 0.0 21.98632371472983 0.0 28 0.0 0.0 0.0 22.40659122747539 0.0 29 0.0 0.0 0.0 22.83517453575472 0.0 30 0.0 0.0 0.0 23.29702102616917 0.0 31 0.0 0.0 0.0 23.735199483141322 0.0 32 0.0 0.0 0.0 24.1292402561265 0.0 33 6.39676579521394E-4 0.0 0.0 24.544390356235887 0.0 34 6.39676579521394E-4 0.0 0.0 24.919240831835424 0.0 35 6.39676579521394E-4 0.0 0.0 25.32095772377486 0.0 36 6.39676579521394E-4 0.0 0.0 25.723314292293818 0.0 37 6.39676579521394E-4 0.0 0.0 26.066820615496805 0.0 38 6.39676579521394E-4 0.0 0.0 26.471096213754326 0.0 39 6.39676579521394E-4 0.0 0.0 26.828675421706784 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTGAAG 20 7.014574E-4 45.000004 1 GATACCA 20 7.014574E-4 45.000004 9 CCGGGAT 20 7.014574E-4 45.000004 5 AACCCGC 20 7.014574E-4 45.000004 21 TCCGAAC 20 7.014574E-4 45.000004 17 TGGGTGC 35 1.2029341E-7 45.000004 6 GCTATTA 20 7.014574E-4 45.000004 9 CGTTCTT 20 7.014574E-4 45.000004 1 TGCGGGA 35 1.2029341E-7 45.000004 4 ACTTAGG 20 7.014574E-4 45.000004 2 GCGCAGG 20 7.014574E-4 45.000004 2 GTAATGG 20 7.014574E-4 45.000004 2 TAGCACG 20 7.014574E-4 45.000004 1 CTTATTA 20 7.014574E-4 45.000004 19 GCGGGCA 20 7.014574E-4 45.000004 5 CGGGATT 40 6.7502697E-9 45.000004 6 GCGATTG 30 2.1534397E-6 45.000004 9 GTTCCGA 20 7.014574E-4 45.000004 15 ATGAACA 20 7.014574E-4 45.000004 34 GATTGGG 40 6.7502697E-9 45.000004 3 >>END_MODULE