SRR2935669.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935669.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	543149
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36560	6.7311179805173165	No Hit
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	997	0.18355920751027804	TruSeq Adapter, Index 22 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	776	0.14287055669806994	TruSeq Adapter, Index 22 (95% over 23bp)
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	754	0.13882010277106283	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	732	0.13476964884405568	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGC	687	0.12648462944790473	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	661	0.12169772935235082	No Hit
GAATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTC	639	0.11764727542534369	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCG	591	0.10880992140278266	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	578	0.10641647135500572	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGAC	20	7.0299953E-4	45.000004	26
ACCGAAC	20	7.0299953E-4	45.000004	11
GCGTTAT	20	7.0299953E-4	45.000004	11
GTTCCGA	50	2.1827873E-11	45.000004	15
GCGATTA	25	3.8880782E-5	45.000004	9
AACTCGT	20	7.0299953E-4	45.000004	44
CAACTCG	25	3.8880782E-5	45.000004	39
AGTACGG	30	2.1633787E-6	45.000004	2
CCCGCAT	50	2.1827873E-11	45.000004	23
CGTTTTT	20790	0.0	44.686146	1
TGCATTA	275	0.0	43.363636	15
CTCAACT	380	0.0	42.039474	2
CGGGTAT	55	6.002665E-11	40.909092	6
TCCGAAC	55	6.002665E-11	40.909092	17
TTCCGAA	55	6.002665E-11	40.909092	16
CCATACG	55	6.002665E-11	40.909092	2
GGCGATA	55	6.002665E-11	40.909092	8
ACTTGAC	375	0.0	40.8	6
CAACTTG	375	0.0	40.8	4
GTTTTTT	22995	0.0	40.567513	2