SRR2935668.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935668.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	613768
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39397	6.418874884321111	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	911	0.14842741882926447	No Hit
GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	868	0.14142151431811367	No Hit
CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	777	0.12659506523637595	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	763	0.12431407306995478	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	693	0.11290911223784883	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTAG	25	3.8886734E-5	45.0	1
CGGTTTA	20	7.030714E-4	45.0	14
GTAACGG	25	3.8886734E-5	45.0	2
ACGGTCT	25	3.8886734E-5	45.0	30
CGTTTTT	22255	0.0	44.666367	1
GTTTTTT	24675	0.0	40.395138	2
GTCGATG	45	1.925764E-8	40.0	1
GTATGCG	45	1.925764E-8	40.0	1
CGCCCAA	85	0.0	39.705883	37
TAATGCG	40	3.4547156E-7	39.375	1
GTTAGCG	35	6.24353E-6	38.57143	1
TAACGGG	105	0.0	38.57143	3
GACGGTC	35	6.24353E-6	38.57143	29
TCGTAAG	35	6.24353E-6	38.57143	1
CGGTCTA	35	6.24353E-6	38.57143	31
TGCGGGC	165	0.0	38.181816	4
TCCGCCC	90	0.0	37.5	35
CTACGAA	90	0.0	37.5	11
AGCGTTG	30	1.1393022E-4	37.499996	1
ATCTCCG	30	1.1393022E-4	37.499996	29