SRR2935667.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935667.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	504483
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37924	7.51739900056097	No Hit
GCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	902	0.1787969069324437	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	818	0.1621461971959412	No Hit
CCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC	762	0.15104572403827285	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	718	0.14232392370010485	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	634	0.12567321396360234	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	546	0.10822961328726638	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	524	0.10386871311818238	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGA	20	7.0295174E-4	45.000004	24
GGTAAGT	20	7.0295174E-4	45.000004	8
CGAGTGC	20	7.0295174E-4	45.000004	4
GCCGATA	20	7.0295174E-4	45.000004	9
TACGAAT	80	0.0	45.000004	12
CGAATAT	80	0.0	45.000004	14
CGAATAA	20	7.0295174E-4	45.000004	37
TATGTTC	20	7.0295174E-4	45.000004	12
AATCGTT	20	7.0295174E-4	45.000004	22
TCGATTG	25	3.887684E-5	45.0	1
TCATGCA	45	3.8380676E-10	45.0	24
CGTAATG	25	3.887684E-5	45.0	1
ATGCGAG	25	3.887684E-5	45.0	1
GCTACGA	85	0.0	45.0	10
CGTTTTT	18860	0.0	44.45122	1
TTGATCC	85	0.0	42.35294	17
ACGTGAG	55	6.002665E-11	40.909092	44
AACACGT	55	6.002665E-11	40.909092	41
GTTTTTT	20750	0.0	40.619278	2
CTACGAA	95	0.0	40.263157	11