SRR2935665.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935665.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	812159
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55252	6.803101363156721	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGC	8711	1.0725732276561608	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTC	8572	1.0554583523669625	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCG	7777	0.9575711160006846	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	2325	0.2862739931466622	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTTCGGAT	1983	0.2441640122192822	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCT	1618	0.1992220735102363	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	1564	0.19257312915328156	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTC	1316	0.1620372365509709	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1293	0.15920527876930501	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTA	1292	0.15908215017010216	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	1098	0.13519520192474627	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	1029	0.12669932857974853	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	988	0.12165105601243108	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAGCTCCGATCGAATGC	870	0.10712188130649294	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	866	0.10662936690968147	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGACG	20	7.032063E-4	45.0	1
TTACGAG	20	7.032063E-4	45.0	1
TGCGTAG	20	7.032063E-4	45.0	1
CTTACCG	20	7.032063E-4	45.0	1
CGTTTTT	30710	0.0	44.41387	1
GATGAAT	1795	0.0	41.866295	20
CGATGAA	1705	0.0	41.832844	19
ATGAATG	1800	0.0	41.75	21
CCGATGA	1655	0.0	41.73716	18
TACGGCT	990	0.0	41.59091	7
CGATCGA	260	0.0	41.53846	41
ACGGCTG	995	0.0	41.381912	8
CGTAAGG	55	6.002665E-11	40.909092	2
GTTTTTT	33875	0.0	40.43026	2
ACCGATG	1725	0.0	40.173912	17
ATCGAAT	265	0.0	39.905663	43
CTCCGAT	210	0.0	39.642857	38
CGACCCG	80	0.0	39.375	32
CGGCTGT	1090	0.0	39.013763	9
CGGGTAT	35	6.246024E-6	38.57143	6