SRR2935663.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935663.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	485718
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35073	7.220856546391116	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	682	0.140410690977069	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	628	0.1292931289348964	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTG	621	0.12785196348498512	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	512	0.10541095862208112	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	35	1.2099918E-7	45.000004	31
TTTCGCG	20	7.029261E-4	45.0	1
GTAGCCG	20	7.029261E-4	45.0	43
TGCGATG	25	3.8874674E-5	45.0	1
TAGGACG	25	3.8874674E-5	45.0	1
CGTTTTT	19100	0.0	44.458115	1
CGAATAT	55	6.002665E-11	40.909092	14
GCTACGA	55	6.002665E-11	40.909092	10
GTTTTTT	21100	0.0	40.382706	2
ACAACGA	95	0.0	40.263157	13
AGCGACT	95	0.0	40.263157	19
TCACGAC	40	3.452733E-7	39.375	25
CTCACGA	40	3.452733E-7	39.375	24
ATAGGGT	35	6.24084E-6	38.57143	4
AACGAGC	100	0.0	38.25	15
CACAACG	100	0.0	38.25	12
ATAGGGA	150	0.0	37.500004	4
CGATTGA	30	1.13895156E-4	37.499996	10
ACGGGTC	30	1.13895156E-4	37.499996	5
CTACGAA	60	1.546141E-10	37.499996	11