SRR2935659.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935659.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	299356
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21618	7.221502157965766	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	477	0.1593420542765136	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	462	0.15433129785272384	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	446	0.14898649100068148	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	406	0.1356244738705755	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	379	0.12660511230775398	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	328	0.10956854046686888	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGA	60	0.0	45.000004	4
CTAGATC	20	7.02492E-4	45.0	19
CTCGTAC	20	7.02492E-4	45.0	30
TAGACGG	20	7.02492E-4	45.0	2
TTTCGCA	20	7.02492E-4	45.0	14
CCGCTAT	20	7.02492E-4	45.0	25
TCGATAG	25	3.8838712E-5	45.0	1
TAGCACG	20	7.02492E-4	45.0	1
CGCTATC	20	7.02492E-4	45.0	26
ATAAGCG	20	7.02492E-4	45.0	1
CGGGACC	40	6.7866495E-9	45.0	6
GCGATGT	25	3.8838712E-5	45.0	9
TCGTACG	20	7.02492E-4	45.0	31
ACGTATA	20	7.02492E-4	45.0	13
TCGAGCG	20	7.02492E-4	45.0	1
CACGTGA	25	3.8838712E-5	45.0	43
TTCGCAA	20	7.02492E-4	45.0	15
CCCGCTA	20	7.02492E-4	45.0	24
GGTAGGT	20	7.02492E-4	45.0	17
CGTTTTT	11540	0.0	44.33709	1