SRR2935657.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935657.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	468054
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26897	5.746559157704026	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	2255	0.48178201660492165	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	2175	0.46468997166993553	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	1889	0.40358591102736013	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	1375	0.2937695223200742	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	756	0.16151982463561898	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	695	0.14848714037269203	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	603	0.128831288697458	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGGCATT	525	0.11216654488584651	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	510	0.1089617864605366	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	500	0.10682528084366334	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCT	474	0.10127036623979284	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTGCG	20	7.0289953E-4	45.000004	1
TAAACGA	20	7.0289953E-4	45.000004	27
TCGTGAG	20	7.0289953E-4	45.000004	1
AATTGCG	20	7.0289953E-4	45.000004	1
CATAGCC	20	7.0289953E-4	45.000004	10
GTTCACG	20	7.0289953E-4	45.000004	1
GTATACG	20	7.0289953E-4	45.000004	1
TGCTACG	20	7.0289953E-4	45.000004	1
CGGTCCT	20	7.0289953E-4	45.000004	38
CCAACGG	20	7.0289953E-4	45.000004	2
TGCGTAA	20	7.0289953E-4	45.000004	11
TGGCGTT	25	3.8872502E-5	45.0	35
TTCGTAG	25	3.8872502E-5	45.0	1
TCGGCGT	25	3.8872502E-5	45.0	4
ACAACGA	60	0.0	44.999996	13
AGCGTTG	30	2.1627347E-6	44.999996	1
ACGCCGG	30	2.1627347E-6	44.999996	27
TATGACG	30	2.1627347E-6	44.999996	1
GCTACGA	30	2.1627347E-6	44.999996	10
CGGTAGT	30	2.1627347E-6	44.999996	12