SRR2935656.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935656.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	543539
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31626	5.818533720671377	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	781	0.14368794143566516	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	745	0.13706468165117866	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	643	0.11829877892846695	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	636	0.11701092285926123	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	603	0.11093960139014865	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGG	30	2.1633823E-6	45.000004	2
TATACGG	30	2.1633823E-6	45.000004	2
GTTGACG	20	7.0300006E-4	45.0	1
CAACGAC	20	7.0300006E-4	45.0	12
GCCGGAT	20	7.0300006E-4	45.0	17
CGCGCAA	20	7.0300006E-4	45.0	18
TCGTGCG	20	7.0300006E-4	45.0	1
CGTGTTG	20	7.0300006E-4	45.0	30
GCAATCG	25	3.8880833E-5	45.0	21
GTGCGAA	20	7.0300006E-4	45.0	9
GCGTACG	25	3.8880833E-5	45.0	1
CGTTTTT	20770	0.0	44.393356	1
GTTTTTT	23205	0.0	39.909504	2
TACGGCA	40	3.4537334E-7	39.375	41
TAGGGTC	80	0.0	39.375	5
TACGGGA	75	0.0	39.0	4
GCGTTAG	35	6.242213E-6	38.571426	1
GCTCGTA	65	9.094947E-12	38.076927	32
AGTACGG	65	9.094947E-12	38.076927	2
CTCGTAC	60	1.546141E-10	37.500004	29