SRR2935655.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935655.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	373804
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31652	8.467539138157964	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGC	993	0.26564723758975295	No Hit
GCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	879	0.23514997164289306	TruSeq Adapter, Index 13 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTC	842	0.22525173620399994	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCG	767	0.2051877454494869	No Hit
CCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	656	0.17549303913280756	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	539	0.1441932135557672	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	483	0.12921210045906412	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	483	0.12921210045906412	No Hit
CTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGCT	479	0.12814202095215677	TruSeq Adapter, Index 19 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	385	0.10299515253983371	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTCGT	30	2.1615579E-6	45.000004	14
CGTATGG	35	1.2089913E-7	45.000004	2
TCCTCGC	30	2.1615579E-6	45.000004	39
ATATCGG	30	2.1615579E-6	45.000004	2
AACATAC	25	3.8857375E-5	45.000004	16
CATACGA	25	3.8857375E-5	45.000004	18
GACGAGG	35	1.2089913E-7	45.000004	2
AGGGCGC	55	1.8189894E-12	45.000004	6
TCGACAA	25	3.8857375E-5	45.000004	19
CGAGTAG	20	7.027173E-4	45.0	1
TAGAACG	20	7.027173E-4	45.0	1
GTAGGGT	95	0.0	45.0	4
CGACAAT	20	7.027173E-4	45.0	20
AATGCGG	20	7.027173E-4	45.0	2
GTATACG	20	7.027173E-4	45.0	1
CGTAAAT	20	7.027173E-4	45.0	16
GGCGAAC	20	7.027173E-4	45.0	32
CGAAGCC	20	7.027173E-4	45.0	12
CGTTTTT	13950	0.0	44.451614	1
AAGGGCG	100	0.0	40.500004	5