SRR2935648.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935648.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	822905
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTC	10210	1.2407264508053784	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5669	0.6889009059368942	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCG	5576	0.6775994798913605	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGC	5271	0.6405356632904162	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCT	3232	0.3927549352598416	No Hit
GCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGC	2080	0.25276307714742285	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTT	1394	0.16939986997284012	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCT	1164	0.14145010663442317	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTC	1078	0.13099932556005858	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	912	0.11082688767233156	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGCATACT	854	0.10377868648264381	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATGCG	30	2.1647465E-6	45.000004	1
TCCGCAC	25	3.889836E-5	45.0	36
CGCGTAA	20	7.0321176E-4	45.0	31
TGCCGTA	20	7.0321176E-4	45.0	32
CTCGAAT	80	0.0	42.1875	43
CGTTTTT	2665	0.0	41.538464	1
CGAATGC	65	0.0	41.53846	45
GCGAATG	60	3.6379788E-12	41.250004	1
TACGGCT	620	0.0	40.64516	7
CGTTAGG	140	0.0	40.17857	2
GCCGATT	45	1.9272193E-8	40.0	9
ATACGGT	40	3.4566256E-7	39.375	28
CCGATGA	545	0.0	39.220184	18
GCGTTAG	70	0.0	38.571426	1
GCGAGAC	165	0.0	38.181816	21
CGATGAA	580	0.0	38.01724	19
TCGTTTA	30	1.1396398E-4	37.500004	38
ATTACGG	30	1.1396398E-4	37.500004	2
TACGGGT	90	0.0	37.5	4
CCGATTA	85	0.0	37.058823	18