##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935641.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 866395 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.020202101812686 33.0 31.0 34.0 30.0 34.0 2 32.05755111698475 33.0 31.0 34.0 30.0 34.0 3 32.04214128659561 33.0 31.0 34.0 30.0 34.0 4 35.73485419468025 37.0 35.0 37.0 35.0 37.0 5 35.788526018732796 37.0 35.0 37.0 35.0 37.0 6 35.710278798931206 37.0 35.0 37.0 35.0 37.0 7 35.997937430386834 37.0 35.0 37.0 35.0 37.0 8 35.77348668909678 37.0 35.0 37.0 35.0 37.0 9 37.65049198114024 39.0 38.0 39.0 35.0 39.0 10 37.24336705544238 39.0 37.0 39.0 34.0 39.0 11 37.2598306776932 39.0 37.0 39.0 34.0 39.0 12 37.292660968726736 39.0 37.0 39.0 34.0 39.0 13 37.26710334200913 39.0 37.0 39.0 34.0 39.0 14 38.48463691503298 40.0 38.0 41.0 34.0 41.0 15 38.46575522711927 40.0 38.0 41.0 34.0 41.0 16 38.3503286607148 40.0 38.0 41.0 34.0 41.0 17 38.31699282659757 40.0 38.0 41.0 34.0 41.0 18 38.202506939675324 40.0 38.0 41.0 34.0 41.0 19 38.0409686113147 40.0 37.0 41.0 34.0 41.0 20 38.03200964917849 40.0 37.0 41.0 34.0 41.0 21 38.12820134003543 40.0 37.0 41.0 34.0 41.0 22 38.22389787568026 40.0 37.0 41.0 34.0 41.0 23 38.21106192902775 40.0 37.0 41.0 34.0 41.0 24 38.13012886731803 40.0 37.0 41.0 34.0 41.0 25 37.95192146769083 40.0 36.0 41.0 34.0 41.0 26 38.02594774900594 40.0 37.0 41.0 34.0 41.0 27 38.017936391599676 40.0 37.0 41.0 34.0 41.0 28 37.90057075583308 40.0 37.0 41.0 33.0 41.0 29 37.867067561562564 40.0 37.0 41.0 33.0 41.0 30 37.71811933356033 40.0 36.0 41.0 33.0 41.0 31 37.66034891706439 40.0 36.0 41.0 33.0 41.0 32 37.49903912187859 40.0 37.0 41.0 33.0 41.0 33 37.33073251807778 40.0 36.0 41.0 32.0 41.0 34 37.1689044835208 40.0 36.0 41.0 32.0 41.0 35 37.045160694602345 40.0 36.0 41.0 31.0 41.0 36 36.961067411515536 40.0 36.0 41.0 31.0 41.0 37 36.94951032727567 40.0 36.0 41.0 31.0 41.0 38 36.82077458895769 40.0 36.0 41.0 31.0 41.0 39 36.72595525135764 40.0 36.0 41.0 30.0 41.0 40 36.6650073003653 40.0 36.0 41.0 30.0 41.0 41 36.422661718961905 40.0 35.0 41.0 29.0 41.0 42 36.5284910462318 40.0 35.0 41.0 30.0 41.0 43 36.508481697147374 40.0 35.0 41.0 30.0 41.0 44 36.445573901049755 40.0 35.0 41.0 30.0 41.0 45 36.4268226386348 39.0 35.0 41.0 30.0 41.0 46 36.29883136444693 39.0 35.0 41.0 29.0 41.0 47 36.14328568378165 39.0 35.0 41.0 28.0 41.0 48 36.07988965771963 39.0 35.0 41.0 28.0 41.0 49 36.07950876909493 39.0 35.0 41.0 28.0 41.0 50 35.960716532297624 39.0 35.0 41.0 28.0 41.0 51 34.796457735790256 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 8.0 9 13.0 10 9.0 11 10.0 12 9.0 13 15.0 14 15.0 15 16.0 16 36.0 17 92.0 18 203.0 19 469.0 20 945.0 21 1801.0 22 2763.0 23 3854.0 24 5226.0 25 7473.0 26 9952.0 27 11022.0 28 10747.0 29 10909.0 30 12375.0 31 15424.0 32 20026.0 33 26337.0 34 41264.0 35 55152.0 36 57104.0 37 84314.0 38 164873.0 39 323765.0 40 172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.99967105073321 17.40199331713595 21.647631853831104 17.950703778299737 2 29.362934919984536 30.674576838508994 24.189197767761815 15.773290473744655 3 27.937488097230478 29.599432129686804 28.168098846369148 14.294980926713565 4 24.50452738069818 23.14752508959539 35.33226761465613 17.015679915050296 5 28.251548081417827 26.676400487075757 27.106573791399995 17.965477640106418 6 22.862320304249216 35.90510102205114 27.08602888982508 14.14654978387456 7 75.29602548491162 4.25948903213892 16.51325319282775 3.931232290121711 8 76.10777993871156 8.63382175566572 11.103826776470317 4.154571529152407 9 70.38694821646015 6.763081504394647 12.01749779257729 10.832472486567905 10 31.812972143191036 36.498594751816434 19.45833020735346 12.230102897639068 11 24.458474483347665 24.195199649120784 33.60799635270287 17.73832951482869 12 21.400169668569184 22.036599934210148 35.38074434870931 21.182486048511358 13 21.550332123338663 23.700852382573768 38.35883171070932 16.389983783378252 14 19.20244230402992 29.564805891077395 31.840673134078568 19.39207867081412 15 16.819464562930303 26.782241356425185 38.07385776695387 18.324436313690637 16 20.1860583221279 28.235620011657502 29.869978474021664 21.708343192192938 17 20.3992405311665 27.231574512779964 32.22860242729932 20.140582528754205 18 20.26396735899907 26.717374869430227 31.766457562659063 21.25220020891164 19 19.422203498404308 28.144899266500843 30.32692940287052 22.105967832224334 20 21.78844522417604 27.669481010393643 33.12507574489696 17.41699802053336 21 21.983044685160927 29.391674698030346 31.69270367442102 16.93257694238771 22 20.555289446499575 23.761448300140238 33.0657494560795 22.617512797280686 23 19.409160948528097 28.560875812995228 32.608913948026014 19.42104929045066 24 20.448525210787228 26.766890390641684 30.753640083333817 22.030944315237278 25 19.026425591098747 32.470870676769835 28.95850045302662 19.544203279104796 26 20.42948077955205 26.60622464349402 30.676308150439464 22.287986426514465 27 21.680065097328587 27.29367090068618 29.092619417240407 21.933644584744833 28 18.072703559000225 27.06248304757068 33.10753178400152 21.75728160942757 29 22.186069864207433 24.51583861864392 30.485979258883074 22.81211225826557 30 19.99342101466421 26.66959066014924 30.935889519214676 22.401098805971873 31 21.269744169807076 25.43181805065819 29.716584236981973 23.58185354255276 32 21.754280668748088 26.912089751210477 28.71738641150976 22.616243168531675 33 19.60883892450903 25.81524593285972 27.93771893882121 26.63819620381004 34 21.712960024007526 27.591802815113198 29.51852215213615 21.176715008743123 35 19.225411042307492 26.089601163441618 29.854281245852064 24.830706548398826 36 21.086571367563295 28.83453851880493 29.520368884861988 20.558521228769788 37 18.729794147011468 27.188868818495028 30.327391086051975 23.75394594844153 38 18.679124417846364 27.13923787648821 29.756058148996704 24.425579556668726 39 20.906630347589726 28.1751395148864 27.982617628218076 22.935612509305802 40 20.491461746662896 25.701094766244033 31.39122455692842 22.416218930164646 41 19.318671044962173 30.579700944719214 28.252933130962205 21.848694879356415 42 20.44298501260972 25.876649795993746 32.35394941106539 21.326415780331143 43 22.095464539846144 27.08776020175555 27.83487901015126 22.981896248247047 44 21.244236174031474 25.09282717467206 29.49959314169634 24.163343509600125 45 19.90916383404798 24.329895717311388 29.140057364135295 26.620883084505337 46 23.79007265739068 26.650546228914063 27.722689997056772 21.836691116638484 47 18.81335880285551 25.23075502513288 33.76000554019818 22.195880631813434 48 20.47876545917278 26.29816654066563 29.437150491404037 23.785917508757553 49 20.330334316333772 23.827007311907387 32.92239682823654 22.920261543522297 50 20.80194368619394 24.125600909515867 31.14976425302547 23.922691151264726 51 20.38423582776909 23.853669515636632 28.955153249961047 26.806941406633232 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 359.0 1 627.0 2 895.0 3 5984.0 4 11073.0 5 7397.0 6 3721.0 7 3812.5 8 3904.0 9 3863.5 10 3823.0 11 3856.5 12 3890.0 13 3845.0 14 3800.0 15 3645.5 16 3491.0 17 3426.0 18 3361.0 19 3423.0 20 3485.0 21 3577.0 22 3669.0 23 4327.0 24 4985.0 25 5457.5 26 6900.0 27 7870.0 28 10427.5 29 12985.0 30 14769.0 31 16553.0 32 18826.0 33 21099.0 34 24191.0 35 27283.0 36 29999.0 37 32715.0 38 36233.0 39 39751.0 40 42661.0 41 45571.0 42 48959.0 43 52347.0 44 56050.5 45 59754.0 46 93232.0 47 126710.0 48 104314.5 49 81919.0 50 79532.0 51 77145.0 52 66473.0 53 55801.0 54 49084.5 55 42368.0 56 37931.0 57 33494.0 58 29397.5 59 25301.0 60 22037.0 61 18773.0 62 15655.0 63 12537.0 64 10332.0 65 8127.0 66 6470.0 67 4813.0 68 3848.0 69 2883.0 70 2142.0 71 1401.0 72 1194.5 73 988.0 74 940.5 75 698.5 76 504.0 77 349.0 78 194.0 79 173.5 80 153.0 81 98.5 82 44.0 83 28.5 84 13.0 85 10.0 86 7.0 87 6.0 88 5.0 89 4.0 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 866395.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.82400981790722 #Duplication Level Percentage of deduplicated Percentage of total 1 73.32664149095592 23.335477587223444 2 8.963385727896231 5.705017508125183 3 3.430101169543459 3.2747871988789825 4 2.074696395895674 2.6410063388864256 5 1.4986589168086308 2.384666804110603 6 1.1639580238784766 2.222508694772432 7 0.9650895647436393 2.1499113848492972 8 0.8117656292632036 2.066690988440946 9 0.7134270899329298 2.0433699642947882 >10 6.921504101616104 41.750048823070024 >50 0.10126625757293514 2.0443267807863905 >100 0.021856023624276712 1.3254794188511045 >500 0.001457068241618429 0.291549828442409 >1k 0.004735471785259894 3.144217096160421 >5k 3.6426706040460725E-4 0.8084566614542189 >10k+ 0.0010928011812138217 4.812484921653347 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTC 16219 1.8720098800200833 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGC 12792 1.4764628143052534 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCG 12503 1.4431062044448548 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6974 0.8049446268734238 No Hit GAACTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCT 4529 0.5227407822067303 RNA PCR Primer, Index 14 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 4162 0.480381350307885 RNA PCR Primer, Index 14 (95% over 24bp) GAATGACTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCT 2645 0.3052880037396338 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTC 2271 0.2621206262732356 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTCCATAT 2212 0.2553107993467183 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTT 2120 0.24469208617316582 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTCCATATCGTA 1807 0.20856537722401444 No Hit CCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGC 1702 0.19644619371072086 Illumina PCR Primer Index 7 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTGCT 1236 0.14266010307077026 Illumina PCR Primer Index 7 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCC 1153 0.13308017705550007 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTT 1139 0.13146428592039427 No Hit CGCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTCTG 1122 0.12950213239919436 Illumina PCR Primer Index 7 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCGCTCCATATCGTATGCCGTCTTC 1025 0.11830631524881838 RNA PCR Primer, Index 14 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1542079536470086E-4 0.0 0.0 0.1503932963602052 0.0 2 1.1542079536470086E-4 0.0 0.0 0.9698809434495813 0.0 3 1.1542079536470086E-4 0.0 0.0 1.334264394415942 0.0 4 1.1542079536470086E-4 0.0 0.0 2.2218503107704914 0.0 5 1.1542079536470086E-4 0.0 0.0 4.909769793223645 0.0 6 1.1542079536470086E-4 0.0 0.0 5.940477495830423 0.0 7 1.1542079536470086E-4 0.0 0.0 6.90851170655417 0.0 8 1.1542079536470086E-4 0.0 0.0 8.080263621096613 0.0 9 1.1542079536470086E-4 0.0 0.0 8.530058460632851 0.0 10 1.1542079536470086E-4 0.0 0.0 10.722591889380709 0.0 11 1.1542079536470086E-4 0.0 0.0 11.5900945873418 0.0 12 1.1542079536470086E-4 0.0 0.0 13.892277771686125 0.0 13 1.1542079536470086E-4 0.0 0.0 14.33387773475147 0.0 14 1.1542079536470086E-4 0.0 0.0 14.551215092423202 0.0 15 1.1542079536470086E-4 0.0 0.0 14.976540723342124 0.0 16 1.1542079536470086E-4 0.0 0.0 15.42402714697107 0.0 17 1.1542079536470086E-4 0.0 0.0 15.991320356188574 0.0 18 1.1542079536470086E-4 0.0 0.0 16.607782824231442 0.0 19 1.1542079536470086E-4 0.0 0.0 17.264642570651954 0.0 20 1.1542079536470086E-4 0.0 0.0 17.695623820543748 0.0 21 1.1542079536470086E-4 0.0 0.0 18.114947570103705 0.0 22 1.1542079536470086E-4 0.0 0.0 18.676931422734434 0.0 23 4.6168318145880345E-4 0.0 0.0 19.140576757714438 0.0 24 4.6168318145880345E-4 0.0 0.0 19.50703778299736 0.0 25 5.771039768235043E-4 0.0 0.0 19.83448657944702 0.0 26 6.925247721882051E-4 0.0 0.0 20.17163072270731 0.0 27 6.925247721882051E-4 0.0 0.0 20.5480179363916 0.0 28 6.925247721882051E-4 0.0 0.0 20.896473317597632 0.0 29 9.233663629176069E-4 0.0 0.0 21.267320333104415 0.0 30 9.233663629176069E-4 0.0 0.0 21.733274083991713 0.0 31 0.0012696287490117095 0.0 0.0 22.096041643822968 0.0 32 0.0012696287490117095 0.0 0.0 22.465272768194644 0.0 33 0.0012696287490117095 0.0 0.0 22.827694065639808 0.0 34 0.0012696287490117095 0.0 0.0 23.20904437352478 0.0 35 0.0012696287490117095 0.0 0.0 23.590510102205116 0.0 36 0.0012696287490117095 0.0 0.0 23.962742167256273 0.0 37 0.0012696287490117095 0.0 0.0 24.315006434709343 0.0 38 0.0012696287490117095 0.0 0.0 24.705821247814217 0.0 39 0.0012696287490117095 0.0 0.0 25.12295200226225 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 25 3.890007E-5 45.000004 1 CTATACG 25 3.890007E-5 45.000004 1 TAGCGGA 30 2.1648793E-6 45.000004 3 ACGATAG 25 3.890007E-5 45.000004 1 CTACGCT 20 7.032323E-4 45.000004 27 CGTTTTT 4075 0.0 43.398773 1 GTTAGCG 55 6.002665E-11 40.909092 1 GCGTAAG 100 0.0 40.500004 1 TACGGCT 1650 0.0 39.954544 7 GATCGAG 40 3.4568984E-7 39.375004 1 GCGGGTC 80 0.0 39.375004 5 CGCGGGT 105 0.0 38.57143 4 AAGTACG 35 6.2465097E-6 38.571426 1 TTTAACG 35 6.2465097E-6 38.571426 1 CGTTCGG 35 6.2465097E-6 38.571426 2 GCCTCGT 35 6.2465097E-6 38.571426 41 CCGACAG 35 6.2465097E-6 38.571426 1 GCGTACG 35 6.2465097E-6 38.571426 1 GTACGAG 35 6.2465097E-6 38.571426 1 ACGGCTG 1700 0.0 38.382355 8 >>END_MODULE