SRR2935640.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935640.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	246489
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	3967	1.6094024479794231	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	3617	1.4674082819111602	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	2995	1.2150643639269907	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	1576	0.6393794449245199	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	1330	0.5395778310593982	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT	775	0.3144156534368674	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCT	771	0.3127928629675158	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCCAATT	708	0.2872339130752285	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTA	616	0.24990973228014232	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTC	551	0.22353938715317925	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCT	544	0.22069950383181403	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	500	0.2028488086689467	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	483	0.1959519491742025	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCC	409	0.16593032549119838	No Hit
ACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	333	0.1350973065735185	No Hit
TTTTATGGGTTTATGAAAAGTTAGTGTGGTGTTAACACTAAAGTAGGTGGG	304	0.12333207567071958	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	35	1.2067358E-7	45.000004	1
ACGGGTT	35	1.2067358E-7	45.000004	5
AACGGGT	35	1.2067358E-7	45.000004	4
TCACGAG	25	3.8818605E-5	45.0	32
ACAACGT	25	3.8818605E-5	45.0	41
CTTCGAT	20	7.0224935E-4	45.0	19
CGGGTCA	25	3.8818605E-5	45.0	6
AGACTGA	25	3.8818605E-5	45.0	41
AACAACG	20	7.0224935E-4	45.0	40
ACCGGCC	20	7.0224935E-4	45.0	31
TCCGCTA	20	7.0224935E-4	45.0	26
CACGGTT	20	7.0224935E-4	45.0	30
GATCGAG	20	7.0224935E-4	45.0	1
CAACGTA	25	3.8818605E-5	45.0	42
CCCTATG	20	7.0224935E-4	45.0	16
ACTTGCG	25	3.8818605E-5	45.0	16
CATTGCG	25	3.8818605E-5	45.0	24
TCGGGTA	25	3.8818605E-5	45.0	5
ATAGCGG	40	6.7775545E-9	45.0	2
GCACGGT	20	7.0224935E-4	45.0	29