SRR2935639.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935639.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	698950
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTC	16663	2.3840045782960155	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGC	15353	2.1965805851634594	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCG	14921	2.134773588954861	No Hit
GAACTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCT	4062	0.5811574504614064	No Hit
GCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	3768	0.5390943558194434	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCT	2964	0.4240646684312182	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTC	2675	0.38271693254166966	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAACCAGAT	2601	0.37212962300593744	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2341	0.334930967880392	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAACCAGATCGTA	2132	0.30502897202947277	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTT	1910	0.27326704342227626	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1130	0.16167107804563988	No Hit
CCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC	1101	0.15752199728163674	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGCT	760	0.10873453036697904	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	45	3.8380676E-10	45.0	1
CTAAGCG	40	6.8084773E-9	45.0	1
GTATGCG	20	7.031387E-4	45.0	1
CGTACAG	20	7.031387E-4	45.0	24
AGTTACG	20	7.031387E-4	45.0	1
CGGTCTA	40	6.8084773E-9	45.0	31
GCTACGA	90	0.0	45.0	10
CAGTACG	20	7.031387E-4	45.0	1
CGATCGA	70	0.0	45.0	41
TACACCG	20	7.031387E-4	45.0	1
CGATGAA	1320	0.0	43.125	19
GATGAAT	1395	0.0	42.580643	20
CCGATGA	1320	0.0	42.102272	18
TACGGCT	1665	0.0	40.81081	7
ACCGATG	1390	0.0	40.305756	17
ATGAATG	1475	0.0	39.813557	21
ACGGCTG	1710	0.0	39.605263	8
CACCGAT	1530	0.0	39.558823	16
GATACCT	1610	0.0	39.40994	5
TTGCGAG	40	3.455625E-7	39.375	1