##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935639.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 698950 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.012039487803136 33.0 31.0 34.0 30.0 34.0 2 32.03912153945203 33.0 31.0 34.0 30.0 34.0 3 32.070039344731384 33.0 31.0 34.0 30.0 34.0 4 35.735018241648184 37.0 35.0 37.0 35.0 37.0 5 35.74697188640103 37.0 35.0 37.0 35.0 37.0 6 35.64971314114028 37.0 35.0 37.0 33.0 37.0 7 35.88718220187424 37.0 35.0 37.0 35.0 37.0 8 35.58825237856785 37.0 35.0 37.0 33.0 37.0 9 37.391538736676445 39.0 37.0 39.0 34.0 39.0 10 37.16903355032549 39.0 37.0 39.0 34.0 39.0 11 37.174813649045 39.0 37.0 39.0 34.0 39.0 12 37.10862579583661 39.0 37.0 39.0 33.0 39.0 13 36.965257886830244 39.0 37.0 39.0 33.0 39.0 14 38.170276843837186 40.0 37.0 41.0 33.0 41.0 15 38.12852278417626 40.0 37.0 41.0 33.0 41.0 16 38.115162744116176 40.0 37.0 41.0 33.0 41.0 17 37.98569997853924 40.0 37.0 41.0 33.0 41.0 18 37.95261320552257 40.0 37.0 41.0 33.0 41.0 19 37.80280134487445 40.0 37.0 41.0 33.0 41.0 20 37.719583661206094 40.0 36.0 41.0 32.0 41.0 21 37.918962729808996 40.0 36.0 41.0 33.0 41.0 22 37.9650075112669 40.0 37.0 41.0 33.0 41.0 23 37.944961728306744 40.0 37.0 41.0 33.0 41.0 24 37.88370841977252 40.0 36.0 41.0 33.0 41.0 25 37.787232276986906 40.0 36.0 41.0 33.0 41.0 26 37.73074754989627 40.0 36.0 41.0 33.0 41.0 27 37.65735174189856 40.0 36.0 41.0 33.0 41.0 28 37.50377995564776 40.0 36.0 41.0 33.0 41.0 29 37.46389298233064 40.0 36.0 41.0 32.0 41.0 30 37.39050718935546 40.0 36.0 41.0 32.0 41.0 31 37.36158237356034 40.0 36.0 41.0 32.0 41.0 32 37.198762429358325 40.0 36.0 41.0 32.0 41.0 33 37.066649974962445 40.0 35.0 41.0 31.0 41.0 34 36.97513126833107 40.0 35.0 41.0 31.0 41.0 35 36.82599184491022 40.0 35.0 41.0 31.0 41.0 36 36.837815294370124 40.0 35.0 41.0 31.0 41.0 37 36.70134201301953 40.0 35.0 41.0 31.0 41.0 38 36.63345446741541 40.0 35.0 41.0 30.0 41.0 39 36.530122326346664 39.0 35.0 41.0 30.0 41.0 40 36.397014092567424 39.0 35.0 41.0 30.0 41.0 41 36.14367837470491 39.0 35.0 41.0 28.0 41.0 42 36.223619715287214 39.0 35.0 41.0 29.0 41.0 43 36.22004721367766 39.0 35.0 41.0 30.0 41.0 44 36.1975992560269 39.0 35.0 41.0 30.0 41.0 45 36.21393804993204 39.0 35.0 41.0 30.0 41.0 46 36.04806495457472 39.0 35.0 41.0 29.0 41.0 47 35.78389584376565 38.0 35.0 40.0 28.0 41.0 48 35.791092352814935 38.0 35.0 40.0 29.0 41.0 49 35.733068173689105 38.0 35.0 40.0 29.0 41.0 50 35.59463337863939 38.0 35.0 40.0 28.0 41.0 51 34.44939838328922 37.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 8.0 10 12.0 11 14.0 12 14.0 13 12.0 14 16.0 15 19.0 16 47.0 17 104.0 18 249.0 19 596.0 20 1328.0 21 2498.0 22 3338.0 23 4139.0 24 4957.0 25 5849.0 26 6571.0 27 7049.0 28 7493.0 29 8415.0 30 10400.0 31 13617.0 32 18164.0 33 24583.0 34 40476.0 35 53793.0 36 50719.0 37 72778.0 38 128149.0 39 233374.0 40 165.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.252521639602264 15.598826811646042 19.15616281565205 14.992488733099648 2 26.362257672222622 34.66070534372988 22.04306459689534 16.933972387152156 3 28.35424565419558 33.536161384934545 23.211531583088917 14.898061377780959 4 25.453752056656416 22.377280206023322 34.32548823234852 17.843479504971743 5 32.395450318334646 25.853208384004578 22.19257457614994 19.558766721510835 6 22.165534015308676 40.17655054009586 23.278203018813933 14.379712425781529 7 71.7386079118678 5.408827527004792 18.193862221904286 4.658702339223121 8 70.69518563559625 13.957793833607553 10.096573431575935 5.250447099220259 9 65.24615494670577 7.7732312754846555 10.688032048072108 16.292581729737464 10 39.633736318763866 27.387509836182844 18.03390800486444 14.944845840188856 11 33.67622862865727 24.18813935188497 23.963373631876387 18.172258387581373 12 28.960297589241 19.749195221403536 27.352600329065023 23.937906860290436 13 26.813649044996062 22.040060090135203 32.064382287717294 19.08190857715144 14 20.043493812146792 30.963159024250665 25.6626368123614 23.330710351241144 15 17.148580012876458 25.40424923098934 35.78853995278632 21.65863080334788 16 19.199942771299806 25.22498032763431 29.104084698476285 26.4709922025896 17 19.0179555046856 26.97846770155233 30.416911080907077 23.586665712854995 18 20.778596466127762 25.466628514199876 27.300236068388294 26.454538951284068 19 21.914443093211244 27.785249302525216 24.74039630874884 25.5599112955147 20 27.734458831103797 24.892624651262608 29.201087345303673 18.17182917232992 21 24.391444309321127 30.697903998855423 25.27519851205379 19.635453179769655 22 21.057729451319837 23.759639459188783 29.093640460691038 26.088990628800346 23 23.74404463838615 29.472494455969667 26.923814292867874 19.85964661277631 24 23.283639745332284 24.731382788468416 26.55497532012304 25.43000214607626 25 20.994062522354962 32.63852922240504 23.539165891694687 22.828242363545318 26 22.14965305100508 25.486515487516993 27.89956363116103 24.464267830316906 27 26.018742399313254 28.056656413191217 23.757779526432508 22.166821661063025 28 20.058230202446527 29.6275842334931 28.567851777666498 21.746333786393876 29 25.778524930252523 25.211960798340368 26.08198011302668 22.92753415838043 30 21.370627369625865 31.311109521424996 25.952357107089206 21.365906001859933 31 23.260175978253095 29.144144788611488 22.000286143500965 25.59539308963445 32 26.040060090135203 29.5290077974104 22.11617426139209 22.314757851062307 33 22.79490664568281 28.01030116603477 21.598826811646042 27.595965376636382 34 25.536590600185992 28.85628442663996 23.463194792188283 22.143930180985762 35 24.787753058158664 27.466199298948425 22.95715001073038 24.78889763216253 36 22.897489090779025 33.76078403319265 21.872666142070248 21.46906073395808 37 20.74898061377781 30.916231490092283 26.23005937477645 22.104728521353458 38 21.50196723656914 29.071178195865226 22.60619500679591 26.820659560769727 39 23.685814435939623 27.515415981114526 23.72215466056227 25.076614922383577 40 24.655554760712498 23.87123542456542 28.176264396594892 23.29694541812719 41 19.453322841404965 32.26010444237785 25.273481651048 23.013091065169185 42 24.467987695829457 26.35138421918592 27.72501609557193 21.45561198941269 43 24.39273195507547 28.600615208527074 23.358037055583374 23.64861578081408 44 23.12869303955934 26.26539809714572 26.282709778954143 24.323199084340796 45 22.01602403605408 23.966664282137494 25.149438443379356 28.86787323842907 46 25.089205236426064 28.67157879676658 23.273195507547033 22.96602045926032 47 20.2045926031905 26.48301022963016 31.433292796337366 21.87910437084198 48 22.756277273052437 26.945275055440305 25.373059589384077 24.925388082123185 49 21.091065169182343 24.921239001359183 30.01058730953573 23.97710851992274 50 20.90979326132055 25.230703197653625 27.944631232563133 25.914872308462694 51 21.080477859646614 24.35581944345089 25.09321124543959 29.47049145146291 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 493.0 1 924.0 2 1355.0 3 2757.0 4 4159.0 5 2921.0 6 1683.0 7 1610.0 8 1537.0 9 1530.5 10 1524.0 11 1503.5 12 1483.0 13 1498.5 14 1514.0 15 1511.0 16 1508.0 17 1660.5 18 1813.0 19 1742.5 20 1672.0 21 1925.5 22 2179.0 23 2302.0 24 2425.0 25 3128.0 26 4656.5 27 5482.0 28 6190.5 29 6899.0 30 8546.5 31 10194.0 32 11906.0 33 13618.0 34 15557.0 35 17496.0 36 18619.0 37 19742.0 38 21492.0 39 23242.0 40 25014.0 41 26786.0 42 29515.0 43 32244.0 44 35100.0 45 37956.0 46 72268.0 47 106580.0 48 81924.0 49 57268.0 50 56401.5 51 55535.0 52 49670.0 53 43805.0 54 40843.5 55 37882.0 56 35992.5 57 34103.0 58 33397.0 59 32691.0 60 33367.0 61 34043.0 62 30918.5 63 27794.0 64 22490.0 65 17186.0 66 14032.5 67 10879.0 68 8904.0 69 6929.0 70 5986.0 71 5043.0 72 4251.5 73 3460.0 74 2793.5 75 1840.5 76 1554.0 77 1144.5 78 735.0 79 508.5 80 282.0 81 188.5 82 95.0 83 86.5 84 78.0 85 53.5 86 29.0 87 20.0 88 11.0 89 7.5 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 698950.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.816380778340655 #Duplication Level Percentage of deduplicated Percentage of total 1 73.74030993398677 19.77448229902645 2 8.391549244814238 4.500619597382711 3 3.0502192856366572 2.4538752546321243 4 1.7658481700523383 1.8941462769943813 5 1.26644364586975 1.698071752097661 6 0.9816049889826407 1.5793855895086428 7 0.7975390256486667 1.4970977138167008 8 0.7548921754322727 1.6194780818385404 9 0.6514954014495203 1.5723673884547418 >10 8.317456762147593 46.3897196692184 >50 0.21774647929358842 3.61999930719987 >100 0.05524110188974509 2.658405530165857 >500 0.0026816068878517036 0.4416773091938621 >1k 0.005363213775703407 3.550101823556266 >5k 0.0 0.0 >10k+ 0.0016089641327110221 6.750572406913808 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTC 16663 2.3840045782960155 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGC 15353 2.1965805851634594 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCG 14921 2.134773588954861 No Hit GAACTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCT 4062 0.5811574504614064 No Hit GCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC 3768 0.5390943558194434 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCT 2964 0.4240646684312182 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTC 2675 0.38271693254166966 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAACCAGAT 2601 0.37212962300593744 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2341 0.334930967880392 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAACCAGATCGTA 2132 0.30502897202947277 No Hit GAATGCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTT 1910 0.27326704342227626 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1130 0.16167107804563988 No Hit CCTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGC 1101 0.15752199728163674 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGAACCAGATCGTATGCCGTCTTCTGCT 760 0.10873453036697904 Illumina Single End Adapter 1 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.722870019314686E-4 0.0 0.0 0.11846340939981401 0.0 2 5.722870019314686E-4 0.0 0.0 0.9424136204306459 0.0 3 5.722870019314686E-4 0.0 0.0 1.1751913584662708 0.0 4 5.722870019314686E-4 0.0 0.0 2.015165605551184 0.0 5 5.722870019314686E-4 0.0 0.0 5.011517275913871 0.0 6 5.722870019314686E-4 0.0 0.0 5.775091208240933 0.0 7 5.722870019314686E-4 0.0 0.0 6.610487159310394 0.0 8 5.722870019314686E-4 0.0 0.0 7.622004435224265 0.0 9 5.722870019314686E-4 0.0 0.0 7.915730738965591 0.0 10 5.722870019314686E-4 0.0 0.0 10.606195006795907 0.0 11 5.722870019314686E-4 0.0 0.0 11.282065956076973 0.0 12 5.722870019314686E-4 0.0 0.0 14.144073252736247 0.0 13 5.722870019314686E-4 0.0 0.0 14.521353458759569 0.0 14 5.722870019314686E-4 0.0 0.0 14.725230703197653 0.0 15 5.722870019314686E-4 0.0 0.0 15.218255955361613 0.0 16 5.722870019314686E-4 0.0 0.0 15.614564704199156 0.0 17 5.722870019314686E-4 0.0 0.0 16.035195650618785 0.0 18 5.722870019314686E-4 0.0 0.0 16.4801487946205 0.0 19 5.722870019314686E-4 0.0 0.0 17.167894699191645 0.0 20 5.722870019314686E-4 0.0 0.0 17.51112382860004 0.0 21 5.722870019314686E-4 0.0 0.0 17.84333643322126 0.0 22 7.153587524143358E-4 0.0 0.0 18.31776235782245 0.0 23 7.153587524143358E-4 0.0 0.0 18.66671435725016 0.0 24 7.153587524143358E-4 0.0 0.0 18.976178553544603 0.0 25 7.153587524143358E-4 0.0 0.0 19.2434365834466 0.0 26 7.153587524143358E-4 0.0 0.0 19.492381429286787 0.0 27 7.153587524143358E-4 0.0 0.0 19.812289863366477 0.0 28 7.153587524143358E-4 0.0 0.0 20.07139280349095 0.0 29 7.153587524143358E-4 0.0 0.0 20.33979540739681 0.0 30 7.153587524143358E-4 0.0 0.0 20.704342227627155 0.0 31 8.584305028972029E-4 0.0 0.0 20.989198082838545 0.0 32 8.584305028972029E-4 0.0 0.0 21.28836111309822 0.0 33 8.584305028972029E-4 0.0 0.0 21.563488089276774 0.0 34 8.584305028972029E-4 0.0 0.0 21.84390872022319 0.0 35 8.584305028972029E-4 0.0 0.0 22.140067243722726 0.0 36 8.584305028972029E-4 0.0 0.0 22.4292152514486 0.0 37 8.584305028972029E-4 0.0 0.0 22.739967093497388 0.0 38 0.00100150225338007 0.0 0.0 23.01995850919236 0.0 39 0.00100150225338007 0.0 0.0 23.316975463194794 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 45 3.8380676E-10 45.0 1 CTAAGCG 40 6.8084773E-9 45.0 1 GTATGCG 20 7.031387E-4 45.0 1 CGTACAG 20 7.031387E-4 45.0 24 AGTTACG 20 7.031387E-4 45.0 1 CGGTCTA 40 6.8084773E-9 45.0 31 GCTACGA 90 0.0 45.0 10 CAGTACG 20 7.031387E-4 45.0 1 CGATCGA 70 0.0 45.0 41 TACACCG 20 7.031387E-4 45.0 1 CGATGAA 1320 0.0 43.125 19 GATGAAT 1395 0.0 42.580643 20 CCGATGA 1320 0.0 42.102272 18 TACGGCT 1665 0.0 40.81081 7 ACCGATG 1390 0.0 40.305756 17 ATGAATG 1475 0.0 39.813557 21 ACGGCTG 1710 0.0 39.605263 8 CACCGAT 1530 0.0 39.558823 16 GATACCT 1610 0.0 39.40994 5 TTGCGAG 40 3.455625E-7 39.375 1 >>END_MODULE