FastQCFastQC Report
Sat 14 Jan 2017
SRR2935634.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935634.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences231725
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGC82073.5416981335634907No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCG72233.1170568561872907No Hit
GAATCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTC61402.6496925234653146No Hit
GCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC19450.8393569964397454TruSeq Adapter, Index 16 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCT14370.6201316215341461No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATACGCACT13640.588628762541806No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATACGCACTCGTA12650.5459057071960298No Hit
GAACTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCT11260.4859208113065056No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTC10720.4626173265724458No Hit
CCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGC4690.202395080375445TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4290.18513323983169705No Hit
CTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTTCTGCT4060.17520768151904198TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCATACGCACTCGTATG3720.1605351170568562No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCATACGCAC3400.1467256446218578No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCATACGCACTCGTAT3110.13421081022764053No Hit
GAATGCTGTCTCTTATACACATCTGACGCATACGCACTCGTATGCCGTCTT2940.12687452799654764No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCATACGCACTCGT2910.12557988995576655No Hit
GGGGAAGGGAAGGAAAGGAAAGGAAGGGAAAGAGAAGAGAAGAGAAGAGAA2540.10961268745279965No Hit
TATATATATATATATATATATATATATATATATATATATATATATATATAT2490.10745495738483114No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACAACGA351.2063174E-745.00000413
CTATGCG351.2063174E-745.0000041
CGAACCC351.2063174E-745.00000434
GCGAACC351.2063174E-745.00000433
GGGTATA302.1579763E-645.0000047
GGCCGGT302.1579763E-645.0000049
AACGAGC351.2063174E-745.00000415
CATCGGG302.1579763E-645.0000043
GACGCTT302.1579763E-645.0000049
ACCCGGT302.1579763E-645.00000413
TTACCCG302.1579763E-645.00000411
CGATCAC302.1579763E-645.00000434
CGATACC302.1579763E-645.00000434
TTGGGCG351.2063174E-745.0000045
GTTGAAC207.0216187E-445.043
CGGGTTA207.0216187E-445.06
GTTTGCG207.0216187E-445.01
CGGAAAC207.0216187E-445.037
CGAACAC207.0216187E-445.034
GTTCTCG207.0216187E-445.023