SRR2935630.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935630.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	672860
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC	12924	1.9207561751330142	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	12535	1.8629432571411586	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC	11365	1.68905864518622	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	2635	0.39161192521475496	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT	2304	0.3424189281574176	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT	2299	0.34167583152513153	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAAGACT	2264	0.3364741550991291	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1977	0.2938204084059091	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA	1744	0.2591921053413786	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC	1584	0.2354130131082246	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTT	1292	0.19201616978271854	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	749	0.11131587551645215	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACGT	20	7.0312E-4	45.0	44
TATAGCG	30	2.1641554E-6	44.999996	1
ACACTCG	105	0.0	42.85714	40
CCGATGA	1355	0.0	41.84502	18
CGATGAA	1405	0.0	41.156586	19
GATGAAT	1490	0.0	41.073826	20
TACGGCT	1385	0.0	40.938625	7
ACGGCTG	1385	0.0	40.938625	8
GCGAACC	55	6.002665E-11	40.909092	33
CCACCGA	1805	0.0	40.761772	15
CGTTTTT	1075	0.0	40.186047	1
AACGGGA	225	0.0	40.0	4
CACCGAT	1555	0.0	39.790997	16
TACGAAA	85	0.0	39.705883	20
ATGAATG	1555	0.0	39.212215	21
CTCGAAT	190	0.0	39.078945	43
TGATACC	1435	0.0	39.04181	4
ACATGCG	35	6.2444287E-6	38.571426	1
AGTTACG	35	6.2444287E-6	38.571426	1
ACCGATG	1480	0.0	38.158783	17