SRR2935623.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935623.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	705657
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGC	5169	0.7325088534514644	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCG	5030	0.7128108982125877	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTC	4249	0.6021338979135755	No Hit
GCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC	1867	0.26457613259699825	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1506	0.21341813373919621	No Hit
CCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC	1385	0.19627099284779997	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCT	900	0.12754071737402164	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGTCGATT	890	0.12612359829208808	No Hit
CTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGCT	799	0.11322781464649255	No Hit
GAACTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCT	743	0.10529194778766454	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGTCGATTCGTA	735	0.10415825252211768	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	734	0.10401654061392433	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTC	706	0.10004860718451034	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAG	25	3.8892693E-5	45.0	1
CCAATCG	20	7.031433E-4	45.0	1
ACGATAG	25	3.8892693E-5	45.0	1
ACGATAA	20	7.031433E-4	45.0	40
TCCCGAT	20	7.031433E-4	45.0	12
CGATAGT	20	7.031433E-4	45.0	10
GCGTAAG	45	3.8380676E-10	45.0	1
TGTCGAA	30	2.1643064E-6	44.999996	29
CGAAAGG	60	3.6379788E-12	41.249996	2
TTTACGG	95	0.0	40.263157	2
CCGACGG	45	1.9264917E-8	40.0	2
GGACCGT	45	1.9264917E-8	40.0	8
ATAACGG	85	0.0	39.705883	2
CGCGCAT	40	3.455698E-7	39.375	36
TACGCGC	40	3.455698E-7	39.375	34
ATTGCGG	150	0.0	39.0	2
TCATGCG	35	6.24486E-6	38.57143	1
ATTGCTC	35	6.24486E-6	38.57143	21
CGTATGG	65	9.094947E-12	38.07692	2
TAGGGAT	510	0.0	37.5	5