SRR2935621.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935621.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	310155
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGC	2278	0.7344714739404491	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCG	1986	0.6403249987909272	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC	1874	0.6042140220212475	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	1421	0.45815801776531095	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	1216	0.39206203349937935	No Hit
CTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT	713	0.22988505747126436	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	702	0.2263384436813851	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	465	0.14992503748125938	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCT	464	0.14960261804581582	No Hit
TCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	459	0.14799052086859796	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGGGGTT	390	0.12574357982299172	No Hit
ACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	355	0.11445889958246684	No Hit
GAACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCT	332	0.10704325256726477	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTC	311	0.10027244442294982	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTA	311	0.10027244442294982	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCCG	20	7.025314E-4	45.0	30
TCCGGAA	20	7.025314E-4	45.0	33
CTTCGTT	20	7.025314E-4	45.0	7
CGGAATC	20	7.025314E-4	45.0	20
CGGGTAT	25	3.8841987E-5	45.0	6
TTGGCAA	20	7.025314E-4	45.0	28
ACACGCG	25	3.8841987E-5	45.0	36
CACGGGC	25	3.8841987E-5	45.0	4
GCGCGTT	25	3.8841987E-5	45.0	12
CGGCCTA	25	3.8841987E-5	45.0	31
TCCGAGC	20	7.025314E-4	45.0	13
CGGCCAA	20	7.025314E-4	45.0	31
GACGTAT	20	7.025314E-4	45.0	20
GGTCCGA	20	7.025314E-4	45.0	11
CCGGAAT	20	7.025314E-4	45.0	19
GGATACG	25	3.8841987E-5	45.0	1
TCGGCCT	20	7.025314E-4	45.0	30
ATCCGGA	20	7.025314E-4	45.0	32
CCGAGCG	20	7.025314E-4	45.0	14
AGCGATT	45	3.8198777E-10	45.0	22