SRR2935620.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935620.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	500940
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC	3175	0.6338084401325508	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC	3151	0.6290174471992654	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG	3072	0.6132470954605342	No Hit
GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	1790	0.3573282229408712	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1684	0.3361680041521939	No Hit
CCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	1218	0.24314289136423525	TruSeq Adapter, Index 16 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCT	843	0.16828362678165049	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTT	810	0.16169601149838303	No Hit
CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT	809	0.1614963867928295	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCC	650	0.12975605860981354	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCT	601	0.11997444803768914	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTAGCACT	561	0.11198945981554675	No Hit
TCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC	538	0.10739809158781491	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTC	515	0.10280672336008305	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATTACG	30	2.1630403E-6	45.000004	1
CGTATGG	25	3.887643E-5	45.0	2
CGTATAA	25	3.887643E-5	45.0	33
TTGGACG	35	1.2101009E-7	45.0	1
CGTGCGG	45	3.8380676E-10	45.0	2
GCGAAAG	45	3.8380676E-10	45.0	1
GGCACGC	20	7.029471E-4	45.0	8
CGCATCG	25	3.887643E-5	45.0	21
GCGCCGA	20	7.029471E-4	45.0	22
CACGATG	20	7.029471E-4	45.0	1
TACGCGT	20	7.029471E-4	45.0	29
CGGATAA	25	3.887643E-5	45.0	45
CGTAGCA	25	3.887643E-5	45.0	36
ACGCTTG	20	7.029471E-4	45.0	1
GCGATTA	25	3.887643E-5	45.0	9
ATACGTC	20	7.029471E-4	45.0	40
CGCGTAT	25	3.887643E-5	45.0	31
TTCGCAG	25	3.887643E-5	45.0	1
CCAGTCG	25	3.887643E-5	45.0	28
CCGCATC	25	3.887643E-5	45.0	20