##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935620.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 500940 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.988940791312334 33.0 31.0 34.0 30.0 34.0 2 31.98147482732463 33.0 31.0 34.0 30.0 34.0 3 31.9798418972332 33.0 31.0 34.0 30.0 34.0 4 35.66750109793588 37.0 35.0 37.0 33.0 37.0 5 35.741174591767475 37.0 35.0 37.0 35.0 37.0 6 35.68397013614405 37.0 35.0 37.0 33.0 37.0 7 35.964211282788355 37.0 35.0 37.0 35.0 37.0 8 35.80540184453228 37.0 35.0 37.0 35.0 37.0 9 37.565103605222184 39.0 37.0 39.0 35.0 39.0 10 37.11389387950653 39.0 37.0 39.0 33.0 39.0 11 37.170842815506845 39.0 37.0 39.0 34.0 39.0 12 37.12848045674133 39.0 37.0 39.0 34.0 39.0 13 37.08865732423045 39.0 37.0 39.0 33.0 39.0 14 38.211628139098494 40.0 37.0 41.0 33.0 41.0 15 38.30831836148042 40.0 37.0 41.0 34.0 41.0 16 38.110296642312456 40.0 37.0 41.0 33.0 41.0 17 38.11140455942827 40.0 37.0 41.0 33.0 41.0 18 38.03364674412105 40.0 37.0 41.0 33.0 41.0 19 37.91842735656965 40.0 37.0 41.0 33.0 41.0 20 38.03483251487204 40.0 37.0 41.0 34.0 41.0 21 37.994170958597834 40.0 36.0 41.0 34.0 41.0 22 38.08018724797381 40.0 37.0 41.0 34.0 41.0 23 38.115075657763406 40.0 37.0 41.0 34.0 41.0 24 38.08269453427556 40.0 37.0 41.0 34.0 41.0 25 37.77914720325788 40.0 36.0 41.0 33.0 41.0 26 37.91670060286661 40.0 36.0 41.0 34.0 41.0 27 37.9143530163293 40.0 36.0 41.0 34.0 41.0 28 37.635670938635364 40.0 36.0 41.0 33.0 41.0 29 37.46201940352138 40.0 36.0 41.0 33.0 41.0 30 37.32812113227133 40.0 36.0 41.0 32.0 41.0 31 37.33705034535074 40.0 36.0 41.0 32.0 41.0 32 37.346155228171035 40.0 36.0 41.0 33.0 41.0 33 37.284339441849326 40.0 36.0 41.0 32.0 41.0 34 37.16205932846249 40.0 36.0 41.0 32.0 41.0 35 37.1105142332415 40.0 35.0 41.0 32.0 41.0 36 37.01614963867928 40.0 35.0 41.0 31.0 41.0 37 37.03001357447998 40.0 35.0 41.0 31.0 41.0 38 36.839807162534434 40.0 35.0 41.0 31.0 41.0 39 36.77063121331896 39.0 35.0 41.0 31.0 41.0 40 36.70212400686709 39.0 35.0 41.0 31.0 41.0 41 36.553110152912524 39.0 35.0 41.0 30.0 41.0 42 36.579470595280874 39.0 35.0 41.0 30.0 41.0 43 36.47284505130355 39.0 35.0 41.0 30.0 41.0 44 36.411153032299275 39.0 35.0 41.0 30.0 41.0 45 36.42870004391744 39.0 35.0 41.0 30.0 41.0 46 36.25577115023756 39.0 35.0 41.0 30.0 41.0 47 36.21954924741486 39.0 35.0 41.0 30.0 41.0 48 36.14851479219068 39.0 35.0 41.0 30.0 41.0 49 36.00505849003873 39.0 35.0 41.0 29.0 41.0 50 35.81424921148241 39.0 35.0 40.0 28.0 41.0 51 34.67496905817064 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 8.0 10 6.0 11 8.0 12 12.0 13 10.0 14 8.0 15 23.0 16 32.0 17 64.0 18 126.0 19 262.0 20 509.0 21 960.0 22 1450.0 23 2053.0 24 2811.0 25 3851.0 26 4683.0 27 5266.0 28 5789.0 29 6442.0 30 7530.0 31 9275.0 32 12271.0 33 16601.0 34 28809.0 35 39885.0 36 34919.0 37 50947.0 38 96069.0 39 170165.0 40 93.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.036491396175194 18.4942308460095 22.564977841657683 15.904299916157624 2 29.51331496786042 26.551083962151157 25.677127001237672 18.25847406875075 3 29.92414261188965 25.68072024593764 27.802730865971974 16.59240627620074 4 27.12779973649539 24.73509801573043 30.120174072743243 18.01692817503094 5 26.814588573481856 29.30071465644588 25.55515630614445 18.329540463927817 6 23.53375653770911 35.26170798898072 25.99892202659001 15.205613446720164 7 78.21834950293449 5.717451191759492 11.445881742324431 4.618317562981595 8 79.54924741486006 6.6544895596278995 8.772108436140057 5.024154589371981 9 73.8132311254841 7.188685271689224 11.023675490078652 7.974408112748034 10 37.10663951770671 29.38096378807841 18.796263025512037 14.716133668702838 11 28.497824090709468 28.118337525452148 25.438775102806723 17.94506328103166 12 26.042839461811795 21.8367469157983 31.61176987263944 20.50864374975047 13 25.228570287858826 25.031341078771906 32.010420409629894 17.72966822373937 14 19.86864694374576 31.064398930011578 28.786880664351024 20.280073461891643 15 18.0484688785084 26.085559148800257 37.06232283307382 18.80364913961752 16 20.79370782928095 27.070108196590407 30.99832315247335 21.137860821655288 17 20.84461212919711 25.708468080009585 28.174232443007146 25.27268734778616 18 24.220265900107798 24.903381642512077 29.590170479498546 21.286181977881583 19 24.288337924701562 27.247574559827527 26.70559348424961 21.758494031221304 20 23.926418333532958 26.66906216313331 27.837465564738288 21.56705393859544 21 23.330937836866692 28.69365592685751 28.69764842096858 19.277757815307222 22 20.603864734299517 26.852716892242583 27.707110632011815 24.83630774144608 23 19.81155427795744 27.654210085040127 28.030303030303028 24.503932606699404 24 21.060206811194952 24.951890445961592 28.88329939713339 25.104603345710064 25 19.48057651614964 28.957160538188205 27.323431947937877 24.23883099772428 26 18.578871721164212 28.28202978400607 28.200982153551323 24.938116341278395 27 21.265421008504013 27.455583503014335 26.952529245019363 24.326466243462292 28 20.386673054657244 27.59013055455743 30.28167045953607 21.74152593124925 29 20.471713179223062 27.655607457979 29.388549526889445 22.484129835908494 30 21.895236954525494 27.513873917035976 27.975206611570247 22.615682516868286 31 20.997923903062244 29.070547370942627 26.077574160578116 23.853954565417016 32 21.74971054417695 31.294965464925937 25.272886972491715 21.6824370184054 33 22.1733141693616 27.26094941509961 25.981754301912403 24.583982113626384 34 21.00491076775662 28.160857587735055 27.449594761847727 23.384636882660597 35 19.227652014213277 29.96865892122809 25.941829360801695 24.861859703756934 36 20.561743921427716 29.21587415658562 27.1986665069669 23.023715415019762 37 19.221663273046673 30.02135984349423 27.350181658482054 23.406795224977042 38 20.38248093584062 28.656326106918996 25.95779933724598 25.003393619994412 39 22.97979797979798 26.452868607018804 25.638599433065835 24.92873398011738 40 23.35629017447199 26.400167684752663 27.103245897712302 23.14029624306304 41 18.611011298758335 27.039565616640715 25.811474428075222 28.53794865652573 42 20.78412584341438 27.762207050744603 27.24837305864974 24.20529404719128 43 20.88294007266339 26.736734938315966 27.191080768155867 25.189244220864776 44 20.698686469437458 25.94662035373498 27.498303190002794 25.85638998682477 45 19.798977921507564 26.260430390865174 26.70259911366631 27.237992573960952 46 22.42384317483132 28.07442009023037 26.011498383039882 23.490238351898434 47 19.276759691779453 26.047031580628417 29.234838503613208 25.44137022397892 48 19.818541142651814 26.27540224378169 27.556393979318884 26.34966263424762 49 21.807202459376374 23.78388629376772 29.498742364355014 24.910168882500898 50 20.013175230566535 24.246017487124206 30.027747834071945 25.713059448237313 51 20.755180261109114 24.61811793827604 26.57483930211203 28.051862498502818 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 222.0 1 526.0 2 830.0 3 1949.0 4 3068.0 5 2197.0 6 1326.0 7 1258.5 8 1191.0 9 1206.5 10 1222.0 11 1215.0 12 1208.0 13 1213.5 14 1219.0 15 1176.0 16 1133.0 17 1177.5 18 1222.0 19 1253.5 20 1285.0 21 1449.5 22 1614.0 23 1804.5 24 1995.0 25 2609.5 26 3598.5 27 3973.0 28 4567.5 29 5162.0 30 6285.5 31 7409.0 32 8293.0 33 9177.0 34 10228.0 35 11279.0 36 13081.0 37 14883.0 38 16823.5 39 18764.0 40 20782.5 41 22801.0 42 26802.5 43 30804.0 44 33427.5 45 36051.0 46 47874.5 47 59698.0 48 57346.0 49 54994.0 50 52691.5 51 50389.0 52 43031.5 53 35674.0 54 31450.5 55 27227.0 56 24336.0 57 21445.0 58 20087.0 59 18729.0 60 18277.0 61 17825.0 62 15090.0 63 12355.0 64 9944.0 65 7533.0 66 6216.5 67 4900.0 68 4182.0 69 3464.0 70 2718.5 71 1973.0 72 1771.5 73 1570.0 74 1281.5 75 766.5 76 540.0 77 448.0 78 356.0 79 220.0 80 84.0 81 64.0 82 44.0 83 47.5 84 51.0 85 36.5 86 22.0 87 12.0 88 2.0 89 4.0 90 6.0 91 3.5 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 500940.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.869831201065836 #Duplication Level Percentage of deduplicated Percentage of total 1 75.92442226160178 28.75245055085304 2 9.727251990178667 7.367387818365957 3 3.538404091581118 4.01996297008013 4 1.814657366275134 2.748830725944401 5 1.1700333101732623 2.2154481977942875 6 0.8471896926825571 1.9249758394302767 7 0.6719575785010141 1.7812844050477246 8 0.566961507304573 1.7176589263300825 9 0.4626523445932331 1.5768509575070775 >10 5.121943672764665 39.26983845857927 >50 0.11748223604234466 2.853192565894136 >100 0.029635158641310902 1.880818447068592 >500 0.004233594091615843 1.067567380664293 >1k 0.0031751955687118827 2.8237327564407524 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGC 3175 0.6338084401325508 No Hit GAATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTC 3151 0.6290174471992654 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCG 3072 0.6132470954605342 No Hit GCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 1790 0.3573282229408712 TruSeq Adapter, Index 16 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1684 0.3361680041521939 No Hit CCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 1218 0.24314289136423525 TruSeq Adapter, Index 16 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCT 843 0.16828362678165049 No Hit GAATGCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTT 810 0.16169601149838303 No Hit CTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGCT 809 0.1614963867928295 TruSeq Adapter, Index 13 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCC 650 0.12975605860981354 No Hit GAATGACTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCT 601 0.11997444803768914 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTAGCACT 561 0.11198945981554675 No Hit TCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTCTTCTGC 538 0.10739809158781491 TruSeq Adapter, Index 16 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCACTAGCACTCGTATGCCGTC 515 0.10280672336008305 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16828362678165049 0.0 2 0.0 0.0 0.0 0.9837505489679402 0.0 3 0.0 0.0 0.0 1.396973689463808 0.0 4 0.0 0.0 0.0 2.011618157863217 0.0 5 0.0 0.0 0.0 3.7198067632850242 0.0 6 1.9962470555355931E-4 0.0 0.0 4.766638719207889 0.0 7 1.9962470555355931E-4 0.0 0.0 5.672336008304388 0.0 8 1.9962470555355931E-4 0.0 0.0 7.14975845410628 0.0 9 1.9962470555355931E-4 0.0 0.0 7.730865971972691 0.0 10 1.9962470555355931E-4 0.0 0.0 9.484169760849603 0.0 11 1.9962470555355931E-4 0.0 0.0 10.8356290174472 0.0 12 1.9962470555355931E-4 0.0 0.0 12.625663752145966 0.0 13 1.9962470555355931E-4 0.0 0.0 13.27763804048389 0.0 14 1.9962470555355931E-4 0.0 0.0 13.557711502375534 0.0 15 1.9962470555355931E-4 0.0 0.0 13.973929013454706 0.0 16 1.9962470555355931E-4 0.0 0.0 14.690581706391983 0.0 17 1.9962470555355931E-4 0.0 0.0 15.560346548488841 0.0 18 3.9924941110711863E-4 0.0 0.0 16.702599113666306 0.0 19 3.9924941110711863E-4 0.0 0.0 17.362558390226376 0.0 20 3.9924941110711863E-4 0.0 0.0 18.006547690342156 0.0 21 3.9924941110711863E-4 0.0 0.0 18.703637162135188 0.0 22 3.9924941110711863E-4 0.0 0.0 19.418493232722483 0.0 23 3.9924941110711863E-4 0.0 0.0 20.165089631492794 0.0 24 3.9924941110711863E-4 0.0 0.0 20.696091348265263 0.0 25 3.9924941110711863E-4 0.0 0.0 21.21930770152114 0.0 26 3.9924941110711863E-4 0.0 0.0 21.71277997364954 0.0 27 3.9924941110711863E-4 0.0 0.0 22.2545614245219 0.0 28 3.9924941110711863E-4 0.0 0.0 22.75701680840021 0.0 29 3.9924941110711863E-4 0.0 0.0 23.27943466283387 0.0 30 0.001996247055535593 0.0 0.0 23.916037848844173 0.0 31 0.0021958717610891525 0.0 0.0 24.503932606699404 0.0 32 0.0021958717610891525 0.0 0.0 25.084441250449157 0.0 33 0.0021958717610891525 0.0 0.0 25.67692737653212 0.0 34 0.0021958717610891525 0.0 0.0 26.263225136742925 0.0 35 0.0021958717610891525 0.0 0.0 26.81658482053739 0.0 36 0.0021958717610891525 0.0 0.0 27.313650337365754 0.0 37 0.0021958717610891525 0.0 0.0 27.847047550604863 0.0 38 0.002395496466642712 0.0 0.0 28.392621870882742 0.0 39 0.002395496466642712 0.0 0.0 28.989300115782328 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATTACG 30 2.1630403E-6 45.000004 1 CGTATGG 25 3.887643E-5 45.0 2 CGTATAA 25 3.887643E-5 45.0 33 TTGGACG 35 1.2101009E-7 45.0 1 CGTGCGG 45 3.8380676E-10 45.0 2 GCGAAAG 45 3.8380676E-10 45.0 1 GGCACGC 20 7.029471E-4 45.0 8 CGCATCG 25 3.887643E-5 45.0 21 GCGCCGA 20 7.029471E-4 45.0 22 CACGATG 20 7.029471E-4 45.0 1 TACGCGT 20 7.029471E-4 45.0 29 CGGATAA 25 3.887643E-5 45.0 45 CGTAGCA 25 3.887643E-5 45.0 36 ACGCTTG 20 7.029471E-4 45.0 1 GCGATTA 25 3.887643E-5 45.0 9 ATACGTC 20 7.029471E-4 45.0 40 CGCGTAT 25 3.887643E-5 45.0 31 TTCGCAG 25 3.887643E-5 45.0 1 CCAGTCG 25 3.887643E-5 45.0 28 CCGCATC 25 3.887643E-5 45.0 20 >>END_MODULE