SRR2935617.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935617.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	420563
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGC	9326	2.2175036795914047	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCG	8622	2.0501090205272456	No Hit
GAATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTC	8194	1.948340676664376	No Hit
GCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC	2476	0.5887346247767873	No Hit
GAACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCT	1664	0.3956601032425582	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCT	1630	0.3875757020945732	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAACGTTGGT	1605	0.38163128948576075	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTA	1369	0.325516034458571	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTC	1246	0.29626952442321364	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1125	0.2674985673965613	No Hit
CCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC	977	0.23230764475239146	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTT	696	0.16549244702933924	No Hit
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT	577	0.13719704301139188	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATG	443	0.10533499142815703	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCTC	20	7.0281787E-4	45.000004	29
AAGACGG	40	6.7975634E-9	45.000004	2
TGTAGCG	20	7.0281787E-4	45.000004	1
TAGGCGA	20	7.0281787E-4	45.000004	14
CAGTAAG	20	7.0281787E-4	45.000004	1
GTATGCG	25	3.8865728E-5	45.0	1
GGTCGAA	135	0.0	43.333336	42
CGATGAA	845	0.0	42.60355	19
ATGAATG	875	0.0	42.171425	21
CGGTCGA	140	0.0	41.785713	41
CCGATGA	835	0.0	41.766468	18
GATGAAT	880	0.0	41.676136	20
GTCGAAT	135	0.0	41.666668	43
CGGCGAA	245	0.0	41.32653	31
TAAGGGA	230	0.0	41.086956	4
TATGGGT	55	6.002665E-11	40.909092	4
TACGGCT	985	0.0	40.431473	7
ACGGCTG	985	0.0	40.431473	8
GCCCGCT	45	1.9232175E-8	40.0	23
CCCGCTA	45	1.9232175E-8	40.0	24