##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935615.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 231553 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06530686279167 33.0 31.0 34.0 30.0 34.0 2 32.07720478680907 33.0 31.0 34.0 30.0 34.0 3 32.085449119639996 33.0 31.0 34.0 30.0 34.0 4 35.74229226138292 37.0 35.0 37.0 33.0 37.0 5 35.8273829317694 37.0 35.0 37.0 35.0 37.0 6 35.761635565075814 37.0 35.0 37.0 35.0 37.0 7 36.042137221284115 37.0 35.0 37.0 35.0 37.0 8 35.82872171813796 37.0 35.0 37.0 35.0 37.0 9 37.64227628231981 39.0 37.0 39.0 35.0 39.0 10 37.28078236947913 39.0 37.0 39.0 34.0 39.0 11 37.23756980043446 39.0 37.0 39.0 34.0 39.0 12 36.964198261305185 39.0 35.0 39.0 34.0 39.0 13 36.706460292028176 39.0 35.0 39.0 33.0 39.0 14 37.72363994420284 40.0 36.0 41.0 33.0 41.0 15 37.90877682431236 40.0 36.0 41.0 33.0 41.0 16 37.845840908992756 40.0 36.0 41.0 33.0 41.0 17 37.87380426943292 40.0 36.0 41.0 34.0 41.0 18 37.814733559919326 39.0 36.0 41.0 33.0 41.0 19 37.69458828000501 39.0 36.0 41.0 33.0 41.0 20 37.79465176439087 39.0 35.0 41.0 34.0 41.0 21 37.73596109745933 39.0 35.0 41.0 34.0 41.0 22 37.83995024897108 40.0 35.0 41.0 34.0 41.0 23 37.86110739226009 40.0 35.0 41.0 34.0 41.0 24 37.762201310283174 39.0 35.0 41.0 34.0 41.0 25 37.551018557306534 39.0 35.0 41.0 33.0 41.0 26 37.583779955344994 39.0 35.0 41.0 33.0 41.0 27 37.59740534564441 39.0 35.0 41.0 33.0 41.0 28 37.52883789024543 39.0 35.0 41.0 33.0 41.0 29 37.52242035300773 39.0 35.0 41.0 33.0 41.0 30 37.38721156711422 39.0 35.0 41.0 33.0 41.0 31 37.3058479052312 39.0 35.0 41.0 33.0 41.0 32 37.21914637253674 39.0 35.0 41.0 33.0 41.0 33 37.158572767357796 39.0 35.0 41.0 33.0 41.0 34 37.01962833562943 39.0 35.0 41.0 33.0 41.0 35 36.99202774310849 39.0 35.0 41.0 33.0 41.0 36 36.90670386477394 39.0 35.0 41.0 32.0 41.0 37 36.83287195588051 39.0 35.0 41.0 32.0 41.0 38 36.738655944859275 39.0 35.0 41.0 32.0 41.0 39 36.6845603382379 39.0 35.0 41.0 32.0 41.0 40 36.54202277664293 39.0 35.0 41.0 31.0 41.0 41 36.40622665221353 39.0 35.0 41.0 31.0 41.0 42 36.52862195696018 39.0 35.0 41.0 31.0 41.0 43 36.48229562994217 39.0 35.0 41.0 31.0 41.0 44 36.38887857207637 39.0 35.0 41.0 31.0 41.0 45 36.36831740465466 39.0 35.0 41.0 31.0 41.0 46 36.21805806877907 38.0 35.0 40.0 31.0 41.0 47 36.08144139786572 38.0 35.0 40.0 30.0 41.0 48 36.050619080728815 38.0 35.0 40.0 30.0 41.0 49 36.09248422607351 38.0 35.0 40.0 31.0 41.0 50 35.958799929173885 38.0 35.0 40.0 30.0 41.0 51 34.82531860956239 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 7.0 11 7.0 12 6.0 13 7.0 14 6.0 15 10.0 16 20.0 17 19.0 18 51.0 19 104.0 20 231.0 21 363.0 22 627.0 23 782.0 24 1095.0 25 1434.0 26 1788.0 27 2141.0 28 2345.0 29 2661.0 30 3341.0 31 4364.0 32 5699.0 33 8310.0 34 17525.0 35 25966.0 36 15949.0 37 22783.0 38 41726.0 39 72130.0 40 52.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.03055024119748 20.72743605135757 24.04244384654917 13.199569860895776 2 31.313781294131367 27.04089344556106 24.913086852685996 16.73223840762158 3 30.353741907900133 26.837916157424 26.341701467914476 16.46664046676139 4 27.939175912210164 23.98025506039654 29.31942147154215 18.761147555851142 5 26.985182657965996 28.67118974921508 24.731702893074157 19.61192469974477 6 23.7690723074199 35.50461449430584 26.548997421756575 14.177315776517688 7 75.68591208060357 6.116958104623996 12.924902722054993 5.272227092717434 8 75.9834681476811 8.244332830928556 10.062059226181479 5.710139795208873 9 70.66503133191969 7.024309769253691 12.257237004055227 10.053421894771391 10 42.87744058595656 22.137912270624867 19.667635487339833 15.317011656078739 11 34.78944345355059 23.221897362590855 23.730204316074506 18.25845486778405 12 31.25072877483773 20.56548608741843 29.46884730493667 18.714937832807177 13 23.167914041277808 28.551130842614864 31.217906915479393 17.063048200627932 14 18.752942091011562 33.349600307489 28.818456249757073 19.079001351742367 15 16.56726537768891 25.706857609273037 39.942475372808815 17.783401640229236 16 18.34353258217341 24.06792397420893 35.55902968218939 22.02951376142827 17 18.590560260501913 23.06944846320281 30.29328058802952 28.04671068826575 18 19.937983960475574 25.057330287234457 32.40899491693047 22.59569083535951 19 22.893246902437024 25.400664210785433 28.92469542610115 22.781393460676387 20 25.306949164985987 25.465012329790586 30.04107051085497 19.18696799436846 21 22.091270681010393 28.216434250473977 29.826432825314292 19.86586224320134 22 20.11159432181833 25.385117014247278 28.615910828190522 25.88737783574387 23 19.486251527727994 28.57617910370412 27.970270305286476 23.96729906328141 24 20.576714618251547 24.992982168229304 30.954036440901216 23.476266772617933 25 18.395356570633936 28.482032191334167 29.261119484524063 23.861491753507835 26 17.142943516171243 29.453731974969017 30.432341623731933 22.97098288512781 27 19.690956282147067 29.88775787832591 29.40104425336748 21.020241586159543 28 16.894188371560723 27.813934606763898 33.4476340189935 21.84424300268189 29 19.696570547563624 26.067466195644194 31.583266034126094 22.652697222666085 30 20.121959119510436 27.486579746321578 32.329531467957665 20.061929666210325 31 22.563300842571678 28.095079744162245 25.75824973116306 23.58336968210302 32 24.640579046697734 30.23584233415244 24.953682310313404 20.16989630883642 33 23.360958398293263 27.10480969799571 25.37907088226022 24.155161021450812 34 20.749893113023802 29.275371081350706 26.66689699550427 23.307838810121225 35 19.697434280704634 28.741584000207297 27.800114876507752 23.760866842580317 36 22.515363653245693 27.043484644984083 27.072419705207878 23.368731996562342 37 20.10770752268379 27.293967255876623 31.87563970235756 20.722685519082024 38 21.63392398284626 27.399774565650198 25.978933548690797 24.987367902812746 39 23.6015080780642 27.191614878667085 27.17218088299439 22.034696160274322 40 22.716613475100733 26.795593233514577 28.572724171140084 21.91506912024461 41 17.629657141129677 28.721718137964096 26.87030615021183 26.7783185706944 42 20.853109223374346 27.092717434021584 28.351176620471342 23.70299672213273 43 22.260130510077605 24.59393745708326 27.514651073404362 25.631280959434772 44 20.882476150168642 26.257919353236623 28.19613652166027 24.663467974934463 45 20.69677352485176 27.6468022439787 25.900333832859 25.756090398310537 46 23.80362163306025 28.77570145927714 26.498900899578064 20.921776008084542 47 19.02026749815377 27.099195432579148 31.427794068744518 22.45274300052256 48 20.796534702638272 25.52849671565473 28.72128627139359 24.953682310313404 49 21.116547831382015 22.28604250430787 32.0177238040535 24.579685860256614 50 20.75507551186985 24.137454492060133 29.66664219422767 25.440827801842342 51 19.295798370135564 25.654169887671507 26.609458741627183 28.440573000565745 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 243.0 1 381.0 2 519.0 3 822.5 4 1126.0 5 806.0 6 486.0 7 515.0 8 544.0 9 544.0 10 544.0 11 600.5 12 657.0 13 641.5 14 626.0 15 687.0 16 748.0 17 658.0 18 568.0 19 638.0 20 708.0 21 765.5 22 823.0 23 893.0 24 963.0 25 1229.5 26 1625.0 27 1754.0 28 2108.5 29 2463.0 30 2869.0 31 3275.0 32 4037.5 33 4800.0 34 5300.5 35 5801.0 36 6350.0 37 6899.0 38 7371.0 39 7843.0 40 9502.0 41 11161.0 42 14002.5 43 16844.0 44 18449.5 45 20055.0 46 24794.0 47 29533.0 48 27242.5 49 24952.0 50 24490.5 51 24029.0 52 20188.5 53 16348.0 54 13605.0 55 10862.0 56 9748.0 57 8634.0 58 7959.5 59 7285.0 60 6343.0 61 5401.0 62 4886.5 63 4372.0 64 3614.5 65 2857.0 66 2441.5 67 2026.0 68 1728.5 69 1431.0 70 1289.5 71 1148.0 72 902.5 73 657.0 74 665.5 75 466.5 76 259.0 77 171.0 78 83.0 79 45.5 80 8.0 81 9.0 82 10.0 83 20.5 84 31.0 85 17.5 86 4.0 87 2.5 88 1.0 89 1.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 231553.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.48241223391621 #Duplication Level Percentage of deduplicated Percentage of total 1 73.60863668997793 23.909860809404325 2 10.778578456138485 7.002284574157969 3 3.7998245007578375 3.7028239755045282 4 1.8945940915255137 2.461639451874949 5 1.1221315180684448 1.8224769275284707 6 0.7325763820565321 1.4277508820874703 7 0.5916451724413009 1.3452643671211342 8 0.5637248384609248 1.4648914071508468 9 0.4041800728587763 1.1815869368999754 >10 6.260802510170979 45.40299629026616 >50 0.19810141728933442 3.9597845849546323 >100 0.03589757226048342 2.3182597504674956 >500 0.003988619140053713 0.9889744464550232 >1k 0.005318158853404951 3.0114055961270205 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGC 2270 0.9803371150449358 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCG 2106 0.9095109974822179 No Hit GAATCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTC 1496 0.6460723894745479 RNA PCR Primer, Index 30 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGC 1101 0.47548509412531903 Illumina Single End Adapter 2 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGC 979 0.422797372523785 RNA PCR Primer, Index 30 (95% over 24bp) CTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGCT 712 0.3074889981991164 RNA PCR Primer, Index 30 (96% over 25bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 599 0.2586880757321218 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCC 493 0.21291021925865786 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATCGGAACT 414 0.17879276018881207 No Hit GAATGACTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCT 368 0.1589268979456107 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATCGGAACTCGTA 359 0.1550400988110713 No Hit TCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGC 309 0.13344677028585247 Illumina Single End Adapter 2 (95% over 22bp) AGTGGGGGTACTTGATGTAAGTGAAGAGCAGACACTTCCCAAATGGTTTCT 271 0.11703584060668616 No Hit GAATGATCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTC 266 0.11487650775416428 No Hit GAACTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCT 266 0.11487650775416428 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3221724615962652 0.0 2 0.0 0.0 0.0 1.5309669924380163 0.0 3 0.0 0.0 0.0 2.028909148229563 0.0 4 4.3186657050437696E-4 0.0 0.0 2.747535121548846 0.0 5 4.3186657050437696E-4 0.0 0.0 4.880092246699459 0.0 6 4.3186657050437696E-4 0.0 0.0 5.726118858317534 0.0 7 4.3186657050437696E-4 0.0 0.0 6.70256917422793 0.0 8 4.3186657050437696E-4 0.0 0.0 7.963187693530207 0.0 9 4.3186657050437696E-4 0.0 0.0 8.413624526566272 0.0 10 4.3186657050437696E-4 0.0 0.0 10.281879310568208 0.0 11 4.3186657050437696E-4 0.0 0.0 11.851714294351616 0.0 12 4.3186657050437696E-4 0.0 0.0 14.048187671936878 0.0 13 4.3186657050437696E-4 0.0 0.0 14.600545015611976 0.0 14 4.3186657050437696E-4 0.0 0.0 14.826411231985766 0.0 15 4.3186657050437696E-4 0.0 0.0 15.375745509667333 0.0 16 4.3186657050437696E-4 0.0 0.0 16.227386386701966 0.0 17 4.3186657050437696E-4 0.0 0.0 17.21074656774043 0.0 18 4.3186657050437696E-4 0.0 0.0 18.47352441989523 0.0 19 4.3186657050437696E-4 0.0 0.0 19.31739169866078 0.0 20 4.3186657050437696E-4 0.0 0.0 19.981170617526008 0.0 21 4.3186657050437696E-4 0.0 0.0 20.732618450203624 0.0 22 4.3186657050437696E-4 0.0 0.0 21.51472880938705 0.0 23 4.3186657050437696E-4 0.0 0.0 22.274382106904252 0.0 24 4.3186657050437696E-4 0.0 0.0 22.8712217073413 0.0 25 4.3186657050437696E-4 0.0 0.0 23.462015175791286 0.0 26 4.3186657050437696E-4 0.0 0.0 24.00012092263974 0.0 27 4.3186657050437696E-4 0.0 0.0 24.512314675257933 0.0 28 4.3186657050437696E-4 0.0 0.0 24.974411905697615 0.0 29 4.3186657050437696E-4 0.0 0.0 25.505607787418 0.0 30 4.3186657050437696E-4 0.0 0.0 26.102015521284542 0.0 31 4.3186657050437696E-4 0.0 0.0 26.645735533549555 0.0 32 4.3186657050437696E-4 0.0 0.0 27.18600061325053 0.0 33 4.3186657050437696E-4 0.0 0.0 27.66062197423484 0.0 34 4.3186657050437696E-4 0.0 0.0 28.19743212137178 0.0 35 4.3186657050437696E-4 0.0 0.0 28.776133325847645 0.0 36 4.3186657050437696E-4 0.0 0.0 29.298691876157942 0.0 37 4.3186657050437696E-4 0.0 0.0 29.839820688999925 0.0 38 4.3186657050437696E-4 0.0 0.0 30.295871787452548 0.0 39 4.3186657050437696E-4 0.0 0.0 30.793813943244096 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGGGAA 60 0.0 45.000004 5 GATTGCG 30 2.1579708E-6 45.000004 1 GTTGACG 25 3.8811286E-5 45.0 1 CGGGTTC 20 7.021608E-4 45.0 6 AGGTATA 20 7.021608E-4 45.0 6 AGACTGG 20 7.021608E-4 45.0 2 GTCGATG 25 3.8811286E-5 45.0 1 ATTAGCG 25 3.8811286E-5 45.0 1 TTGTGCG 20 7.021608E-4 45.0 1 GCGCGAC 20 7.021608E-4 45.0 9 GGCACCG 25 3.8811286E-5 45.0 8 GGCGTAG 20 7.021608E-4 45.0 1 TAGAACG 20 7.021608E-4 45.0 1 CCGTGGC 20 7.021608E-4 45.0 27 CGTCTAC 20 7.021608E-4 45.0 35 CGATTGA 25 3.8811286E-5 45.0 10 AAGCGGC 20 7.021608E-4 45.0 22 TACGGGT 20 7.021608E-4 45.0 4 GGATAGT 20 7.021608E-4 45.0 8 CGACAGG 35 1.2063174E-7 45.0 2 >>END_MODULE