SRR2935613.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935613.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	684305
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2193	0.32047113494713614	No Hit
CCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	1079	0.1576782282754035	Illumina PCR Primer Index 7 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGC	995	0.14540300012421362	Illumina PCR Primer Index 7 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	926	0.13531977700002193	No Hit
CTGTCTCTTATACACATCTGACGCGGGTCATATCGTATGCCGTCTTCTGCT	698	0.10200130058964935	Illumina PCR Primer Index 7 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGT	20	7.0312835E-4	45.0	42
ATAGCCG	25	3.889145E-5	45.0	1
TCGATTG	25	3.889145E-5	45.0	35
CGTTAAT	20	7.0312835E-4	45.0	30
TATAGCG	25	3.889145E-5	45.0	1
CTCGAAC	20	7.0312835E-4	45.0	13
ACCGTAA	20	7.0312835E-4	45.0	27
CACGTTG	25	3.889145E-5	45.0	23
TACGAAT	90	0.0	42.5	12
CGAATAT	90	0.0	42.5	14
TAGCCGT	60	3.6379788E-12	41.250004	44
CGTAAGG	105	0.0	40.714287	2
GCGTACG	45	1.9263098E-8	40.0	1
AACACGT	305	0.0	39.836067	41
ACGGGTA	80	0.0	39.375	5
TTAAGCG	40	3.4554796E-7	39.375	1
ACAACGA	405	0.0	38.88889	13
CAATTGG	105	0.0	38.57143	2
ACGGGAC	210	0.0	38.57143	5
CGTTTTT	1110	0.0	38.51351	1