SRR2935610.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935610.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	595758
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4304	0.722440991140698	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGC	4267	0.716230415705706	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCG	3803	0.6383464426831029	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTC	3235	0.543005717086468	No Hit
GCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	1351	0.22676993007227766	TruSeq Adapter, Index 20 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC	1032	0.173224698619238	TruSeq Adapter, Index 20 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGCT	795	0.13344344515726186	TruSeq Adapter, Index 22 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCT	730	0.12253297479849201	No Hit
CGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTG	701	0.1176652264845793	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCC	692	0.11615454597336501	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGGCTTAT	685	0.11497957224242059	No Hit
GAACTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCT	643	0.1079297298567539	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.030548E-4	45.0	1
GACGTAG	40	6.8048394E-9	45.0	1
GTTAGCG	20	7.030548E-4	45.0	1
CTAAGCG	20	7.030548E-4	45.0	1
TCGATAG	25	3.8885362E-5	45.0	1
TAGCCGT	25	3.8885362E-5	45.0	44
ACGCTAA	20	7.030548E-4	45.0	42
CCGACGG	25	3.8885362E-5	45.0	2
CTCGAAC	25	3.8885362E-5	45.0	12
AATAGCG	20	7.030548E-4	45.0	1
GCCGTTG	25	3.8885362E-5	45.0	1
TCGCGTG	25	3.8885362E-5	45.0	1
TCGGTAG	20	7.030548E-4	45.0	1
TCGAACA	20	7.030548E-4	45.0	13
TATTGCG	75	0.0	42.0	1
CGTTTTT	2340	0.0	41.923073	1
TTAGCGG	140	0.0	41.785713	2
GCGATTT	60	3.6379788E-12	41.249996	9
CTCGATC	55	6.002665E-11	40.909092	16
ATTAGCG	50	1.0804797E-9	40.5	1