##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935610.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 595758 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.119677788632295 33.0 31.0 34.0 30.0 34.0 2 32.15440665505121 33.0 31.0 34.0 30.0 34.0 3 32.12103907962629 33.0 31.0 34.0 30.0 34.0 4 35.805644238096676 37.0 35.0 37.0 35.0 37.0 5 35.8794544093407 37.0 35.0 37.0 35.0 37.0 6 35.83150708844867 37.0 35.0 37.0 35.0 37.0 7 36.110581813420886 37.0 35.0 37.0 35.0 37.0 8 35.948834929619075 37.0 35.0 37.0 35.0 37.0 9 37.81829031250944 39.0 38.0 39.0 35.0 39.0 10 37.38061091919874 39.0 37.0 39.0 34.0 39.0 11 37.33086588849835 39.0 37.0 39.0 34.0 39.0 12 37.3138824824845 39.0 37.0 39.0 34.0 39.0 13 37.280496443186664 39.0 37.0 39.0 34.0 39.0 14 38.48119202763538 40.0 38.0 41.0 34.0 41.0 15 38.56439695312526 40.0 38.0 41.0 34.0 41.0 16 38.38912780021418 40.0 38.0 41.0 34.0 41.0 17 38.42126501028941 40.0 38.0 41.0 34.0 41.0 18 38.32044051443707 40.0 38.0 41.0 34.0 41.0 19 38.13739471396104 40.0 37.0 41.0 34.0 41.0 20 38.21801805431064 40.0 37.0 41.0 34.0 41.0 21 38.19910433431024 40.0 37.0 41.0 34.0 41.0 22 38.29142537741835 40.0 37.0 41.0 34.0 41.0 23 38.287405288724614 40.0 37.0 41.0 34.0 41.0 24 38.22747155724304 40.0 37.0 41.0 34.0 41.0 25 38.00576576395113 40.0 36.0 41.0 34.0 41.0 26 38.08150792771561 40.0 37.0 41.0 34.0 41.0 27 38.07227095565649 40.0 37.0 41.0 34.0 41.0 28 37.95680293004878 40.0 36.0 41.0 34.0 41.0 29 37.90350108601143 40.0 36.0 41.0 34.0 41.0 30 37.762836588010565 40.0 36.0 41.0 33.0 41.0 31 37.71477848388104 40.0 36.0 41.0 33.0 41.0 32 37.60032261421584 40.0 36.0 41.0 33.0 41.0 33 37.43173234769823 40.0 36.0 41.0 33.0 41.0 34 37.27262411918934 40.0 36.0 41.0 32.0 41.0 35 37.179990868775576 40.0 36.0 41.0 32.0 41.0 36 37.08965049567106 40.0 36.0 41.0 32.0 41.0 37 37.06404110393817 40.0 36.0 41.0 32.0 41.0 38 36.92797914589481 40.0 35.0 41.0 31.0 41.0 39 36.85432675683751 40.0 35.0 41.0 31.0 41.0 40 36.79481265883127 40.0 35.0 41.0 31.0 41.0 41 36.6424538151397 40.0 35.0 41.0 30.0 41.0 42 36.67315923579709 40.0 35.0 41.0 31.0 41.0 43 36.59329291423699 40.0 35.0 41.0 30.0 41.0 44 36.508911336482264 39.0 35.0 41.0 30.0 41.0 45 36.48790616324078 39.0 35.0 41.0 30.0 41.0 46 36.375164076688854 39.0 35.0 41.0 30.0 41.0 47 36.294478630584905 39.0 35.0 41.0 30.0 41.0 48 36.189719651267794 39.0 35.0 41.0 29.0 41.0 49 36.16133228592818 39.0 35.0 41.0 29.0 41.0 50 36.036956280906004 39.0 35.0 41.0 29.0 41.0 51 34.93494002598371 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 10.0 10 11.0 11 14.0 12 13.0 13 11.0 14 5.0 15 16.0 16 34.0 17 58.0 18 151.0 19 289.0 20 548.0 21 922.0 22 1521.0 23 2241.0 24 3121.0 25 4666.0 26 6259.0 27 7063.0 28 7066.0 29 7086.0 30 8109.0 31 9861.0 32 12551.0 33 17186.0 34 30650.0 35 43292.0 36 37704.0 37 57046.0 38 110546.0 39 227557.0 40 147.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.40012891140362 20.47576364899842 24.823334306882998 14.300773132714962 2 32.44891382071244 26.540474487963234 25.446070384283555 15.564541307040777 3 29.06901795695568 25.85059705450871 29.163351562211503 15.917033426324112 4 26.232799223845927 24.438278629913487 31.52588802836051 17.803034117880078 5 26.682814162797648 28.33113445392257 26.85721383514783 18.12883754813196 6 23.776936272781903 35.08488345939123 26.63077961185582 14.507400655971047 7 79.11551334602305 4.622346657535442 12.444818197993145 3.8173217984483636 8 81.27863998469176 5.964334511664132 9.27524263207544 3.4817828715686567 9 75.59344566082201 6.802930048778196 10.62444818197993 6.979176108419861 10 36.46581330003122 33.28146663578164 17.907942486714404 12.344777577472732 11 25.544600324292748 25.0141836114664 32.333598541689746 17.107617522551102 12 23.643157120844368 21.834033281970196 33.999879145559106 20.52293045162633 13 22.204989274168373 24.14151383615495 35.9701422389628 17.68335465071388 14 18.711288811900133 29.082781934946738 32.57161464890107 19.63431460425206 15 17.582306909852658 25.909010034275664 37.37692150168357 19.13176155418811 16 20.59141463480138 26.204767707693392 32.844544261260445 20.359273396244784 17 21.00769104233598 25.918745530903486 31.41157986967863 21.6619835570819 18 21.40567143034588 25.29852725435496 32.312113307752476 20.98368800754669 19 21.25728903346661 27.42556541414467 30.458844027272818 20.858301525115902 20 23.565105294431632 27.184527945910926 31.212673602368746 18.037693157288697 21 22.395167165191236 28.081368609401803 31.101051097929023 18.422413127477935 22 21.534750687359633 23.81789249997482 31.69340571171516 22.953951100950388 23 19.95692882009138 27.90579396332068 31.286361240637977 20.850915975949967 24 20.497416736325825 25.983369086105434 32.21828326266706 21.300930914901688 25 19.29827211720195 29.639215923244 30.306768855810578 20.755743103743466 26 18.778430167954102 28.275239275007635 30.990939274000517 21.95539128303774 27 20.536358722837125 27.731058584190226 30.554352606259588 21.17823008671306 28 18.911202199550825 26.87601341484294 33.521161276894304 20.691623108711926 29 20.20568754427133 26.43875533354147 31.465964368082343 21.889592754104857 30 21.09363197808506 27.355906257238676 30.32103639397205 21.22942537070421 31 23.292679242242656 26.424152088599733 28.57754323064063 21.705625438516982 32 23.54664142151679 27.953464326118993 28.242843570711596 20.257050681652615 33 21.438906401592593 26.234813464527544 28.51140899492747 23.81487113895239 34 20.88381524041641 27.245794433310174 30.22619922854582 21.6441910977276 35 20.215087334118888 26.75666965445701 30.15502939112861 22.873213620295488 36 21.760009936920696 28.935238805018145 28.602889092551003 20.701862165510157 37 21.41624619392438 27.1185615635879 29.874042816042756 21.591149426444968 38 21.34910483787041 27.66777785610936 27.84352035558062 23.139596950439607 39 22.111662789253355 26.82313959695044 29.07657135951175 21.98862625428446 40 20.929303509142976 25.085689155663875 31.072012461435683 22.912994873757462 41 18.9048237707257 27.62715733569671 30.0376998714243 23.43031902215329 42 20.679873371402483 26.9950214684486 30.426280469586644 21.898824690562275 43 21.370757925197815 27.13182198140856 28.007009557572033 23.490410535821592 44 21.654933714696238 25.998811597997847 28.90922152954723 23.437033157758687 45 21.039583186461616 25.505490484391313 28.830498289573953 24.624428039573115 46 22.049557034903433 26.883231110618745 28.164623890908725 22.9025879635691 47 19.702630934036975 25.59545990150363 31.779178794074102 22.922730370385292 48 20.67366279596749 25.94258071230265 30.55032412489635 22.833432366833513 49 20.722172425716483 24.567190033537106 31.89029773834342 22.82033980240299 50 21.163291134991052 24.76273923304429 30.63794359454678 23.43602603741788 51 20.59074322124084 24.594382282738962 28.70444039358263 26.11043410243757 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 247.0 1 473.5 2 700.0 3 3878.0 4 7056.0 5 4755.5 6 2455.0 7 2423.0 8 2391.0 9 2420.0 10 2449.0 11 2485.5 12 2522.0 13 2413.0 14 2304.0 15 2299.0 16 2294.0 17 2294.5 18 2295.0 19 2327.0 20 2359.0 21 2505.5 22 2652.0 23 2967.5 24 3283.0 25 3934.5 26 6017.0 27 7448.0 28 8127.0 29 8806.0 30 10804.5 31 12803.0 32 13579.0 33 14355.0 34 17491.0 35 20627.0 36 21564.5 37 22502.0 38 24275.0 39 26048.0 40 28211.0 41 30374.0 42 33306.5 43 36239.0 44 39097.5 45 41956.0 46 53310.0 47 64664.0 48 60560.5 49 56457.0 50 53679.0 51 50901.0 52 45005.5 53 39110.0 54 34769.0 55 30428.0 56 27555.5 57 24683.0 58 22651.0 59 20619.0 60 18726.5 61 16834.0 62 14439.0 63 12044.0 64 9968.0 65 7892.0 66 6242.5 67 4593.0 68 3884.0 69 3175.0 70 2607.0 71 2039.0 72 1720.5 73 1402.0 74 1279.0 75 861.0 76 566.0 77 404.5 78 243.0 79 184.5 80 126.0 81 86.0 82 46.0 83 30.0 84 14.0 85 10.5 86 7.0 87 5.0 88 3.0 89 1.5 90 0.0 91 1.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 595758.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.83034577468451 #Duplication Level Percentage of deduplicated Percentage of total 1 74.92835227491538 24.59923713512841 2 9.193727656923139 6.036665158701335 3 3.2937197096690776 3.244018708599879 4 1.7840014208239094 2.342775340327096 5 1.2007717965623885 1.9710876638816168 6 0.912894654164663 1.798238829125215 7 0.7699450717757774 1.7694294053739141 8 0.612617352659461 1.6089951612305555 9 0.5414171391738282 1.599742069867554 >10 6.539989129616021 45.781334348283444 >50 0.19018153273680619 3.7926413555795784 >100 0.024672198841517647 1.4174944332303911 >500 0.004626037282784559 1.0022023141613445 >1k 0.003084024855189706 3.0361380765096664 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4304 0.722440991140698 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGC 4267 0.716230415705706 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCG 3803 0.6383464426831029 No Hit GAATCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTC 3235 0.543005717086468 No Hit GCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC 1351 0.22676993007227766 TruSeq Adapter, Index 20 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGC 1032 0.173224698619238 TruSeq Adapter, Index 20 (95% over 22bp) CTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGCT 795 0.13344344515726186 TruSeq Adapter, Index 22 (95% over 22bp) GAATGACTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCT 730 0.12253297479849201 No Hit CGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTG 701 0.1176652264845793 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCC 692 0.11615454597336501 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGGCTTAT 685 0.11497957224242059 No Hit GAACTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCT 643 0.1079297298567539 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.357067802698411E-4 0.0 0.0 0.14838239687926977 0.0 2 3.357067802698411E-4 0.0 0.0 0.7216017241900234 0.0 3 3.357067802698411E-4 0.0 0.0 1.077450911276055 0.0 4 3.357067802698411E-4 0.0 0.0 1.5346835460035786 0.0 5 3.357067802698411E-4 0.0 0.0 2.9144384129126255 0.0 6 3.357067802698411E-4 0.0 0.0 3.6937817033090616 0.0 7 3.357067802698411E-4 0.0 0.0 4.431665206342172 0.0 8 3.357067802698411E-4 0.0 0.0 5.466313503133823 0.0 9 3.357067802698411E-4 0.0 0.0 5.924049698031751 0.0 10 3.357067802698411E-4 0.0 0.0 7.423484032106996 0.0 11 3.357067802698411E-4 0.0 0.0 8.46400719755337 0.0 12 3.357067802698411E-4 0.0 0.0 10.009097653745313 0.0 13 3.357067802698411E-4 0.0 0.0 10.441655840123003 0.0 14 3.357067802698411E-4 0.0 0.0 10.648115509988955 0.0 15 3.357067802698411E-4 0.0 0.0 10.973079673290162 0.0 16 3.357067802698411E-4 0.0 0.0 11.452468955515494 0.0 17 3.357067802698411E-4 0.0 0.0 12.077219273597668 0.0 18 3.357067802698411E-4 0.0 0.0 12.79093188845135 0.0 19 3.357067802698411E-4 0.0 0.0 13.335616139439168 0.0 20 3.357067802698411E-4 0.0 0.0 13.77539202159266 0.0 21 3.357067802698411E-4 0.0 0.0 14.27408444368351 0.0 22 3.357067802698411E-4 0.0 0.0 14.843946703191564 0.0 23 3.357067802698411E-4 0.0 0.0 15.41112330845746 0.0 24 3.357067802698411E-4 0.0 0.0 15.864159608431612 0.0 25 3.357067802698411E-4 0.0 0.0 16.240822615894373 0.0 26 3.357067802698411E-4 0.0 0.0 16.602714525025263 0.0 27 3.357067802698411E-4 0.0 0.0 17.007073341860284 0.0 28 3.357067802698411E-4 0.0 0.0 17.40119310189708 0.0 29 3.357067802698411E-4 0.0 0.0 17.827708566229912 0.0 30 3.357067802698411E-4 0.0 0.0 18.333618684096564 0.0 31 3.357067802698411E-4 0.0 0.0 18.78346576965815 0.0 32 3.357067802698411E-4 0.0 0.0 19.22038814417935 0.0 33 6.714135605396822E-4 0.0 0.0 19.664863921256618 0.0 34 6.714135605396822E-4 0.0 0.0 20.1108503788451 0.0 35 6.714135605396822E-4 0.0 0.0 20.549954847438055 0.0 36 6.714135605396822E-4 0.0 0.0 20.970931149896433 0.0 37 6.714135605396822E-4 0.0 0.0 21.40600713712615 0.0 38 6.714135605396822E-4 0.0 0.0 21.851657887934362 0.0 39 6.714135605396822E-4 0.0 0.0 22.35740015241088 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 20 7.030548E-4 45.0 1 GACGTAG 40 6.8048394E-9 45.0 1 GTTAGCG 20 7.030548E-4 45.0 1 CTAAGCG 20 7.030548E-4 45.0 1 TCGATAG 25 3.8885362E-5 45.0 1 TAGCCGT 25 3.8885362E-5 45.0 44 ACGCTAA 20 7.030548E-4 45.0 42 CCGACGG 25 3.8885362E-5 45.0 2 CTCGAAC 25 3.8885362E-5 45.0 12 AATAGCG 20 7.030548E-4 45.0 1 GCCGTTG 25 3.8885362E-5 45.0 1 TCGCGTG 25 3.8885362E-5 45.0 1 TCGGTAG 20 7.030548E-4 45.0 1 TCGAACA 20 7.030548E-4 45.0 13 TATTGCG 75 0.0 42.0 1 CGTTTTT 2340 0.0 41.923073 1 TTAGCGG 140 0.0 41.785713 2 GCGATTT 60 3.6379788E-12 41.249996 9 CTCGATC 55 6.002665E-11 40.909092 16 ATTAGCG 50 1.0804797E-9 40.5 1 >>END_MODULE