SRR2935608.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935608.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	545474
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGC	5954	1.0915277355107669	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCG	5835	1.0697118469441258	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC	4917	0.9014178494300369	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2217	0.4064355038003645	No Hit
GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	1805	0.33090486439316996	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1243	0.22787520578432702	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	1055	0.1934097683849276	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCT	1039	0.1904765396700851	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTCTCCTT	974	0.17856029801603743	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	948	0.17379380135441835	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTA	825	0.1512446056090666	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	796	0.14592812856341456	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTC	675	0.12374558640741813	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTT	625	0.1145792466735353	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC	586	0.10742950168110671	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	574	0.10522958014497483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCACG	20	7.030022E-4	45.000004	1
TAGACGG	20	7.030022E-4	45.000004	2
GACGTAG	20	7.030022E-4	45.000004	9
GGACGTA	30	2.163395E-6	45.000004	8
ATCGGAT	30	2.163395E-6	45.000004	25
CGTCAAG	20	7.030022E-4	45.000004	10
TATTACG	25	3.8881015E-5	45.0	1
AACGAAG	45	3.8380676E-10	45.0	1
CGACAGG	55	6.002665E-11	40.909092	2
CGCGAAT	50	1.0786607E-9	40.5	27
CCGATGA	325	0.0	40.153843	18
TACGAAT	90	0.0	40.0	12
GTCATAC	40	3.4537698E-7	39.375004	39
CACGCCA	40	3.4537698E-7	39.375004	27
CCATAGG	40	3.4537698E-7	39.375004	2
CGTCATA	40	3.4537698E-7	39.375004	38
TAGGGTA	75	0.0	39.000004	5
AGGGTAC	110	0.0	38.863636	6
AACGGGA	180	0.0	38.75	4
ATTACGG	35	6.242253E-6	38.571426	2