SRR2935607.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935607.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	854466
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7889	0.9232666952225133	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCG	6550	0.7665606355314313	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGC	6520	0.7630496707885394	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC	5609	0.6564333747627173	No Hit
GCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	1778	0.20808317709540228	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGC	1202	0.14067265403187487	TruSeq Adapter, Index 13 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCT	1199	0.14032155755758566	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTT	1153	0.1349380782851512	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCT	1111	0.13002272764510234	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTC	1062	0.12428815189837865	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTCGCTTT	1039	0.12159641226216139	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCC	1032	0.12077718715548659	No Hit
CGCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTG	985	0.1152766757249557	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTC	876	0.10252017049244791	No Hit
CTGTCTCTTATACACATCTGACGCACTCGCTTTCGTATGCCGTCTTCTGCT	872	0.10205204186006231	TruSeq Adapter, Index 16 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTACGA	35	1.211447E-7	45.000004	10
AAGCGAT	20	7.032269E-4	45.0	31
CATTACG	20	7.032269E-4	45.0	15
GTTCACG	45	3.8380676E-10	45.0	1
TATAGCG	20	7.032269E-4	45.0	1
CCGTTAG	40	6.8121153E-9	45.0	1
TAGTACG	30	2.1648466E-6	44.999996	1
CGTTAGG	110	0.0	42.954544	2
CGTTTTT	4050	0.0	42.22222	1
TACGGCT	775	0.0	40.064518	7
CGTAAGG	45	1.9272193E-8	40.0	2
TTCGACG	45	1.9272193E-8	40.0	25
GCCGATA	40	3.4568257E-7	39.375	9
CGAATAT	40	3.4568257E-7	39.375	14
AATTGCG	35	6.246406E-6	38.57143	1
ATAACGG	70	0.0	38.57143	2
ATACGGA	65	9.094947E-12	38.07692	4
ATGGGAC	315	0.0	37.857143	5
ACGGCTG	840	0.0	37.767857	8
CGATGAA	435	0.0	37.75862	19