SRR2935605.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935605.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	324886
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	1241	0.3819801407262855	No Hit
CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	1025	0.31549528142179106	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	858	0.26409263557063095	No Hit
CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT	710	0.21853819493606988	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC	584	0.17975536034178144	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCC	554	0.17052135210504607	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG	510	0.1569781400245009	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	493	0.15174553535701754	No Hit
AAGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTACTCTTCCAAA	380	0.11696410433198105	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	20	7.0258067E-4	45.000004	1
TACGGGT	20	7.0258067E-4	45.000004	4
CGCGAGG	35	1.2083365E-7	45.000004	2
TCTAGCG	20	7.0258067E-4	45.000004	1
CGTTAGG	40	6.7884685E-9	45.000004	2
TTATACG	20	7.0258067E-4	45.000004	1
ATTCCGG	20	7.0258067E-4	45.000004	11
CTACGAA	35	1.2083365E-7	45.000004	11
TCGTCCC	20	7.0258067E-4	45.000004	38
AGTTACT	20	7.0258067E-4	45.000004	17
GGCGCTA	20	7.0258067E-4	45.000004	34
TAGGCAG	35	1.2083365E-7	45.000004	1
GATTCCG	20	7.0258067E-4	45.000004	10
CCACGAA	20	7.0258067E-4	45.000004	31
AATACGG	20	7.0258067E-4	45.000004	2
GTACGAG	35	1.2083365E-7	45.000004	1
CGGGTAT	55	1.8189894E-12	45.0	6
CATACGA	45	3.8380676E-10	45.0	18
CTCGAGG	45	3.8380676E-10	45.0	2
GCGAGAC	25	3.8846083E-5	44.999996	21