SRR2935603.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935603.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348494
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	935	0.2682973021056317	No Hit
GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	874	0.2507934139468685	TruSeq Adapter, Index 15 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	813	0.23328952578810538	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCG	727	0.20861191297411147	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGC	718	0.20602937209822839	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	689	0.19770785149816067	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTC	646	0.1853690450911637	No Hit
CTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGCT	525	0.15064821775984666	TruSeq Adapter, Index 14 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCC	400	0.11477959448369268	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGAACCG	20	7.026512E-4	45.000004	1
CCCCGAT	20	7.026512E-4	45.000004	40
AATTGCG	20	7.026512E-4	45.000004	1
CGTAGGC	20	7.026512E-4	45.000004	23
GCTTACG	20	7.026512E-4	45.000004	1
ATCCCCG	20	7.026512E-4	45.000004	38
GCGATAT	20	7.026512E-4	45.000004	9
TCGTAAG	20	7.026512E-4	45.000004	1
TAGTCGC	20	7.026512E-4	45.000004	44
CGACAGG	45	3.8380676E-10	45.0	2
CGGGCAC	45	3.8380676E-10	45.0	6
CAACGTG	25	3.8851933E-5	44.999996	40
CGTTAGG	25	3.8851933E-5	44.999996	2
ATCCGAG	30	2.1611322E-6	44.999996	1
TCTAACG	25	3.8851933E-5	44.999996	40
GATTACG	25	3.8851933E-5	44.999996	1
ACTAATC	80	0.0	42.187504	10
GCGAGAC	65	0.0	41.53846	21
CGTAAGG	55	6.002665E-11	40.90909	2
CGAGGGT	40	3.4489858E-7	39.375004	4