SRR2935601.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935601.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	587581
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1882	0.32029626553615587	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGC	1347	0.2292449892014888	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCG	1321	0.22482006736092558	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTC	1111	0.18908031403329922	No Hit
GCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	813	0.1383639021683819	No Hit
CCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGC	688	0.11709023947336623	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	638	0.10858077439535996	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACAC	25	3.888469E-5	45.000004	30
CGTAAGG	100	0.0	45.000004	2
ATACGTA	25	3.888469E-5	45.000004	27
GTAACGG	45	3.8380676E-10	45.000004	2
CGTGCCG	20	7.030468E-4	45.0	27
GTTTACG	20	7.030468E-4	45.0	1
TTTCGAT	20	7.030468E-4	45.0	13
AAGCGTG	20	7.030468E-4	45.0	34
TCTAGCG	35	1.2105738E-7	45.0	1
CCGTAAT	20	7.030468E-4	45.0	11
CGTAGAT	20	7.030468E-4	45.0	30
GAACGTT	20	7.030468E-4	45.0	37
CGTAATT	20	7.030468E-4	45.0	12
TATAGCG	20	7.030468E-4	45.0	1
AACTCGA	20	7.030468E-4	45.0	11
TACGTTG	20	7.030468E-4	45.0	1
TAATGCG	30	2.1636843E-6	44.999996	1
GCGTAAG	65	0.0	41.53846	1
AACGGGC	105	0.0	40.714287	4
TTTACGG	50	1.0804797E-9	40.500004	2