SRR2935599.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935599.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	567867
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

$Per Sequence quality graph$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1619	0.28510196929914927	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	937	0.16500342509777818	No Hit
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	630	0.11094147044994691	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTACG	25	3.888303E-5	45.000004	26
TAATACG	20	7.0302683E-4	45.0	1
TGCCCGC	20	7.0302683E-4	45.0	41
GTTTACG	20	7.0302683E-4	45.0	1
TTGTACG	20	7.0302683E-4	45.0	1
AGTTACG	20	7.0302683E-4	45.0	1
TATAGCG	20	7.0302683E-4	45.0	1
ACAACGA	120	0.0	41.249996	13
GCTACGA	100	0.0	40.500004	10
GATCTCG	45	1.9254003E-8	40.000004	9
GACCGAT	130	0.0	39.807693	9
ATATGCG	40	3.4540972E-7	39.375	1
TTGAGCG	40	3.4540972E-7	39.375	1
ACACGAC	35	6.242706E-6	38.57143	26
TACGAAT	105	0.0	38.57143	12
CGAATAT	105	0.0	38.57143	14
CGGCTAG	35	6.242706E-6	38.57143	30
AACGAGC	130	0.0	38.076927	15
TACGCTC	30	1.13919465E-4	37.499996	30
CTACGAA	110	0.0	36.81818	11