SRR2935598.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935598.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	513738
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTC	11649	2.2674982189365007	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGC	11328	2.205015007649814	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCG	10984	2.138054806146324	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	3066	0.5968022610747112	No Hit
GAACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCT	2512	0.4889651923743231	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTT	2320	0.45159205665144486	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCT	2175	0.4233675531107296	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGATTGGAT	2032	0.39553235306712764	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1799	0.35017849565342646	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTC	1748	0.3402512564770369	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGATTGGATCGTA	1604	0.3122214046848783	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	846	0.16467537927893205	No Hit
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT	731	0.14229042819491647	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCC	583	0.1134819694085312	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	557	0.10842102394605811	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATG	531	0.10336007848358501	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTCA	20	7.0296385E-4	45.000004	25
GCGTTAG	20	7.0296385E-4	45.000004	1
TTATACG	20	7.0296385E-4	45.000004	26
GTGTCGT	20	7.0296385E-4	45.000004	1
CGATCGA	85	0.0	45.000004	41
TAAGACG	20	7.0296385E-4	45.000004	1
ACTCAAC	35	1.2101737E-7	45.0	45
CGGGTAT	65	0.0	44.999996	6
CCGATGA	1040	0.0	42.403843	18
CGATGAA	1085	0.0	41.8894	19
CCGATTA	60	3.6379788E-12	41.249996	18
AGTACGG	60	3.6379788E-12	41.249996	2
TACGGCT	1355	0.0	41.180813	7
ACGGCTG	1360	0.0	41.029415	8
ACGTTGG	50	1.0786607E-9	40.5	2
TACGGAA	50	1.0786607E-9	40.5	5
GTTCCGA	50	1.0786607E-9	40.5	15
CCGATCG	90	0.0	40.0	40
CGTTAGG	45	1.9246727E-8	40.0	2
AGGGCGC	45	1.9246727E-8	40.0	6