SRR2935597.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935597.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	807217
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4279	0.530092899431008	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC	4232	0.524270425424638	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC	3702	0.45861273982089085	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG	3279	0.4062104737635605	No Hit
GCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	2037	0.2523485010845906	No Hit
CCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	1374	0.17021445286707293	No Hit
CTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGCT	1158	0.14345584892290425	No Hit
GAACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCT	1022	0.12660783903213138	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	949	0.1175644219584077	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCC	931	0.11533453829639367	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAT	20	7.032036E-4	45.000004	8
ATATGCG	20	7.032036E-4	45.000004	1
CCGTAAG	20	7.032036E-4	45.000004	1
ATAACGC	30	2.1646956E-6	45.000004	11
TACCCGT	25	3.8897706E-5	45.0	34
GTTACCG	50	2.1827873E-11	45.0	38
ATACCCG	25	3.8897706E-5	45.0	33
CGTTTTT	2005	0.0	41.857853	1
CGATGAA	255	0.0	40.588234	19
CACAACG	245	0.0	39.489796	12
AACGAGC	255	0.0	38.82353	15
TTGTACG	35	6.2459767E-6	38.57143	1
TAACGCC	35	6.2459767E-6	38.57143	12
TATAGCG	35	6.2459767E-6	38.57143	1
TACGTAG	35	6.2459767E-6	38.57143	1
ACAACGA	255	0.0	37.941177	13
CGTTAGG	60	1.546141E-10	37.500004	2
CGTAAGG	90	0.0	37.5	2
TACGGCT	505	0.0	37.425743	7
TTCACGG	55	2.746674E-9	36.81818	2