SRR2935595.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935595.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	626756
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	1762	0.2811301367677374	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1467	0.23406237834181087	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTC	1325	0.21140603360797505	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGC	1210	0.19305758540803758	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	1209	0.19289803368455985	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCG	1161	0.18523955095762945	No Hit
CTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGCT	957	0.15269099936817518	TruSeq Adapter, Index 21 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	20	7.030829E-4	45.0	1
GTCGATT	20	7.030829E-4	45.0	32
CACGAAA	20	7.030829E-4	45.0	25
TTGAGCG	55	1.8189894E-12	45.0	1
AGGTTCG	20	7.030829E-4	45.0	2
AAGCACG	20	7.030829E-4	45.0	1
CCACGAT	20	7.030829E-4	45.0	44
TAAGACG	20	7.030829E-4	45.0	1
TCAACGG	20	7.030829E-4	45.0	2
TTAACGG	30	2.1639153E-6	44.999996	2
CGTTAGG	55	6.002665E-11	40.909092	2
CACGAGG	50	1.0804797E-9	40.500004	2
ACGGGAA	200	0.0	40.500004	5
GCGATAT	50	1.0804797E-9	40.500004	9
CAATAGG	90	0.0	40.0	2
ACGGGAG	260	0.0	39.80769	5
TACGGGA	125	0.0	39.600002	4
TAGTTAC	35	6.243741E-6	38.57143	14
TATCGAG	35	6.243741E-6	38.57143	1
CGTAAGG	100	0.0	38.250004	2