##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935595.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 626756 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.16025694209549 33.0 31.0 34.0 30.0 34.0 2 32.169740696539 33.0 31.0 34.0 30.0 34.0 3 32.170058204468724 34.0 31.0 34.0 30.0 34.0 4 35.83389389172182 37.0 35.0 37.0 35.0 37.0 5 35.89935955938196 37.0 35.0 37.0 35.0 37.0 6 35.84894440579747 37.0 35.0 37.0 35.0 37.0 7 36.08953723618122 37.0 35.0 37.0 35.0 37.0 8 35.90987561347637 37.0 35.0 37.0 35.0 37.0 9 37.71186713808883 39.0 38.0 39.0 35.0 39.0 10 37.356272616456806 39.0 37.0 39.0 34.0 39.0 11 37.37920179463779 39.0 37.0 39.0 35.0 39.0 12 37.28604432985085 39.0 37.0 39.0 34.0 39.0 13 37.240910338313476 39.0 37.0 39.0 34.0 39.0 14 38.37907734429347 40.0 38.0 41.0 34.0 41.0 15 38.49282974554691 40.0 38.0 41.0 34.0 41.0 16 38.2760404367888 40.0 37.0 41.0 34.0 41.0 17 38.33661903515882 40.0 37.0 41.0 34.0 41.0 18 38.26271467684394 40.0 37.0 41.0 34.0 41.0 19 38.15207832075002 40.0 37.0 41.0 34.0 41.0 20 38.31883699557723 40.0 37.0 41.0 34.0 41.0 21 38.215771368762326 40.0 37.0 41.0 34.0 41.0 22 38.32820268174537 40.0 37.0 41.0 34.0 41.0 23 38.365989316416595 40.0 37.0 41.0 34.0 41.0 24 38.30197876047457 40.0 37.0 41.0 34.0 41.0 25 38.031635915731165 40.0 36.0 41.0 34.0 41.0 26 38.133911761514845 40.0 37.0 41.0 34.0 41.0 27 38.149745674552776 40.0 37.0 41.0 34.0 41.0 28 38.041449942242274 40.0 37.0 41.0 34.0 41.0 29 38.01471226442188 40.0 37.0 41.0 34.0 41.0 30 37.856915609902416 40.0 36.0 41.0 33.0 41.0 31 37.8231895665937 40.0 36.0 41.0 33.0 41.0 32 37.79722092808046 40.0 36.0 41.0 33.0 41.0 33 37.75100517585791 40.0 36.0 41.0 33.0 41.0 34 37.606915609902416 40.0 36.0 41.0 33.0 41.0 35 37.53484769192477 40.0 36.0 41.0 33.0 41.0 36 37.45570525052812 40.0 36.0 41.0 33.0 41.0 37 37.4348709864764 40.0 36.0 41.0 33.0 41.0 38 37.319907587641765 40.0 35.0 41.0 33.0 41.0 39 37.264307003044244 40.0 35.0 41.0 33.0 41.0 40 37.160719642093575 40.0 35.0 41.0 32.0 41.0 41 37.02421995162392 39.0 35.0 41.0 32.0 41.0 42 37.033775504343 39.0 35.0 41.0 32.0 41.0 43 36.97249806942415 39.0 35.0 41.0 32.0 41.0 44 36.878029089470225 39.0 35.0 41.0 32.0 41.0 45 36.85042823682581 39.0 35.0 41.0 32.0 41.0 46 36.70623017569836 39.0 35.0 41.0 31.0 41.0 47 36.65232083936971 39.0 35.0 41.0 31.0 41.0 48 36.57379426762568 39.0 35.0 41.0 31.0 41.0 49 36.52130972818768 39.0 35.0 41.0 31.0 41.0 50 36.40444287729196 39.0 35.0 41.0 31.0 41.0 51 35.33043481035682 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 10.0 9 25.0 10 25.0 11 17.0 12 13.0 13 22.0 14 15.0 15 30.0 16 37.0 17 81.0 18 133.0 19 249.0 20 443.0 21 730.0 22 1191.0 23 1601.0 24 2371.0 25 3261.0 26 4174.0 27 5158.0 28 5845.0 29 6654.0 30 7697.0 31 9963.0 32 13436.0 33 18759.0 34 36154.0 35 48983.0 36 42503.0 37 65795.0 38 119893.0 39 231341.0 40 146.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.12674150706176 20.34268519168544 23.073732042453525 12.456841258799276 2 31.957731557416285 25.24874113690176 24.22617414113307 18.567353164548884 3 32.286248556056904 24.91400162104551 25.777176445059958 17.022573377837627 4 29.386874637019826 25.22943537836096 25.471634894600133 19.91205509001908 5 25.41770641206466 29.311247120091394 24.829120104155365 20.44192636368858 6 25.124131240865665 35.02958088953277 24.963143551876648 14.88314431772492 7 78.28038343470186 7.0220309019778036 9.746855235530253 4.950730427790081 8 79.31507636145486 6.536834110882066 9.08726841067337 5.060821116989706 9 73.16355966277148 7.944239863679008 11.375718780514267 7.5164816930352485 10 39.0978307347676 26.429583442360343 19.32538340279152 15.147202420080541 11 30.585905838954876 26.223283063903658 24.74407903554174 18.44673206159973 12 27.918839229301355 23.63280128151944 29.219664430815186 19.22869505836402 13 25.554601790808544 25.478176515262717 29.731506359731696 19.23571533419704 14 20.126971261543567 29.119944603641606 29.48834953315166 21.264734601663168 15 19.20540050673627 25.945184409881993 34.75339685619284 20.09601822718889 16 22.084830460338633 25.83716789308758 31.61980100709048 20.458200639483305 17 22.17513673582702 25.44307513609762 29.013842707528926 23.367945420546434 18 23.757889832725972 25.061267861815445 30.144745323538984 21.0360969819196 19 24.435665554059316 27.208834059825517 27.245690507948865 21.109809878166306 20 26.121169960877914 25.834774617235418 28.324898365552144 19.71915705633452 21 24.22856741698524 27.50990816202797 28.449189158141287 19.812335262845508 22 22.926784905130546 25.518383549579106 28.59214750237732 22.962684042913033 23 22.47844456215816 27.154267370396134 28.60283746785033 21.764450599595378 24 23.120959352602927 24.39258658872033 29.617107773998175 22.869346284678567 25 21.759983151337998 27.110390646439765 27.96526878083337 23.164357421388864 26 21.24718391208062 27.09172309479287 27.92378533272916 23.73730766039735 27 21.32137546349776 27.521555437841837 28.332397296555595 22.824671802104806 28 19.801485745649025 26.839790923421553 30.829062665534913 22.52966066539451 29 21.092418740307235 25.766805583033907 29.719859083917825 23.420916592741033 30 21.941393460932165 25.5857143768867 30.150648737307662 22.322243424873474 31 23.187492421293136 26.588177855497197 27.645208023537073 22.579121699672598 32 23.085538869990874 27.22813981836632 28.148434159385786 21.537887152257017 33 24.156609589696785 26.3933652011309 27.31030895595734 22.139716253214967 34 21.93628780578088 26.03517158192343 29.403946671431946 22.62459394086375 35 21.54969397979437 26.55626751080165 29.01352360408197 22.88051490532201 36 22.82929880208566 27.78274160917486 27.73104685076808 21.656912737971396 37 21.856671495765497 27.99175436693067 29.136537982883294 21.015036154420542 38 21.337649739292484 28.33128043449125 28.154337573154464 22.176732253061797 39 23.262960386498094 25.536253342608607 28.1418925387232 23.058893732170095 40 24.245799003120833 25.127322275335217 29.02820236264192 21.59867635890203 41 20.57547115623943 26.829100957948548 28.09626074580858 24.499167140003447 42 21.57633911761515 26.01411075442437 28.161836504157918 24.247713623802564 43 21.649413806967942 24.841565138586628 28.819030053162635 24.689991001282795 44 21.996598357255458 24.577347484507527 28.89465757009107 24.531396588145945 45 21.87039294398458 25.115515447797865 28.136467780124963 24.87762382809259 46 22.388138286669772 26.871222612946667 27.70312529915948 23.03751380122408 47 20.710132810854624 26.643542303543967 29.693852152990956 22.952472732610456 48 21.148740498694867 25.349099170969247 30.241114564519528 23.261045765816363 49 22.28219594228057 24.36737741641085 30.558303390793228 22.792123250515353 50 20.50159870826925 25.4196210327464 30.074383013485313 24.004397245499046 51 20.79086598293435 24.66542003586723 28.04855478048874 26.495159200709683 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 318.0 1 873.0 2 1428.0 3 2117.5 4 2807.0 5 1994.5 6 1182.0 7 1179.0 8 1176.0 9 1190.5 10 1205.0 11 1162.5 12 1120.0 13 1215.0 14 1310.0 15 1353.0 16 1396.0 17 1416.5 18 1437.0 19 1649.5 20 1862.0 21 2509.0 22 3156.0 23 3227.0 24 3298.0 25 3646.0 26 5066.5 27 6139.0 28 7192.5 29 8246.0 30 10144.5 31 12043.0 32 12820.5 33 13598.0 34 16119.0 35 18640.0 36 20389.5 37 22139.0 38 23560.5 39 24982.0 40 27766.5 41 30551.0 42 33866.0 43 37181.0 44 40331.0 45 43481.0 46 49739.5 47 55998.0 48 56379.5 49 56761.0 50 55427.0 51 54093.0 52 48413.5 53 42734.0 54 38836.5 55 34939.0 56 31556.0 57 28173.0 58 27187.5 59 26202.0 60 25269.0 61 24336.0 62 22404.5 63 20473.0 64 18010.5 65 15548.0 66 12637.5 67 9727.0 68 7831.0 69 5935.0 70 4967.0 71 3999.0 72 3171.0 73 2343.0 74 1788.0 75 961.5 76 690.0 77 537.5 78 385.0 79 370.5 80 356.0 81 212.0 82 68.0 83 42.0 84 16.0 85 23.5 86 31.0 87 21.0 88 11.0 89 7.5 90 4.0 91 4.0 92 4.0 93 3.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 626756.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.288008082800857 #Duplication Level Percentage of deduplicated Percentage of total 1 73.2910300972672 20.732572517882954 2 9.98155293625549 5.647165002793998 3 3.569014629459265 3.0288094405733457 4 1.803246355537804 2.0404098992293838 5 1.0630663938828049 1.5036015371355376 6 0.7824631671693467 1.3280594638428262 7 0.6061879507857295 1.2003494756066244 8 0.4825027904389684 1.0919234268729205 9 0.4837309938673868 1.2315407637979738 >10 7.47804636971827 50.99901065258099 >50 0.40077151745895306 6.819534987332442 >100 0.052718176978334454 2.637823329138878 >500 0.0022674484721864284 0.4348800528039293 >1k 0.0034011727082796425 1.3043194504082452 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC 1762 0.2811301367677374 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1467 0.23406237834181087 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTC 1325 0.21140603360797505 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGC 1210 0.19305758540803758 No Hit CCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC 1209 0.19289803368455985 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCG 1161 0.18523955095762945 No Hit CTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGCT 957 0.15269099936817518 TruSeq Adapter, Index 21 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.97758617388585E-4 0.0 0.0 0.1605090338185833 0.0 2 7.97758617388585E-4 0.0 0.0 0.8185003414406883 0.0 3 7.97758617388585E-4 0.0 0.0 1.141113926312632 0.0 4 7.97758617388585E-4 0.0 0.0 1.5688720969563914 0.0 5 7.97758617388585E-4 0.0 0.0 2.720835540465508 0.0 6 7.97758617388585E-4 0.0 0.0 3.4332339857935144 0.0 7 7.97758617388585E-4 0.0 0.0 4.082609500347822 0.0 8 7.97758617388585E-4 0.0 0.0 4.998117289662963 0.0 9 7.97758617388585E-4 0.0 0.0 5.3325377020722575 0.0 10 7.97758617388585E-4 0.0 0.0 6.2371959741909135 0.0 11 7.97758617388585E-4 0.0 0.0 7.283855280204737 0.0 12 7.97758617388585E-4 0.0 0.0 8.28089400021699 0.0 13 7.97758617388585E-4 0.0 0.0 8.686793584744303 0.0 14 7.97758617388585E-4 0.0 0.0 8.873947756383664 0.0 15 9.57310340866302E-4 0.0 0.0 9.176298272373938 0.0 16 9.57310340866302E-4 0.0 0.0 9.74717433897721 0.0 17 9.57310340866302E-4 0.0 0.0 10.360650715749031 0.0 18 9.57310340866302E-4 0.0 0.0 11.120116919502964 0.0 19 9.57310340866302E-4 0.0 0.0 11.55505491770322 0.0 20 0.001116862064344019 0.0 0.0 11.977547881472216 0.0 21 0.001116862064344019 0.0 0.0 12.511248396505179 0.0 22 0.001116862064344019 0.0 0.0 13.067126601101545 0.0 23 0.001116862064344019 0.0 0.0 13.58391463344587 0.0 24 0.001116862064344019 0.0 0.0 14.02427739024437 0.0 25 0.001116862064344019 0.0 0.0 14.43655904371079 0.0 26 0.001116862064344019 0.0 0.0 14.811346042159947 0.0 27 0.001116862064344019 0.0 0.0 15.188366764737793 0.0 28 0.0012764137878217361 0.0 0.0 15.577034763129511 0.0 29 0.001435965511299453 0.0 0.0 15.9551723477717 0.0 30 0.001435965511299453 0.0 0.0 16.40654417349016 0.0 31 0.001435965511299453 0.0 0.0 16.817868516615718 0.0 32 0.001435965511299453 0.0 0.0 17.240521032108187 0.0 33 0.001435965511299453 0.0 0.0 17.653121789021565 0.0 34 0.00159551723477717 0.0 0.0 18.04896961496978 0.0 35 0.00159551723477717 0.0 0.0 18.47608957871963 0.0 36 0.0017550689582548872 0.0 0.0 18.872735163285235 0.0 37 0.0017550689582548872 0.0 0.0 19.285495471922086 0.0 38 0.0017550689582548872 0.0 0.0 19.69825578055894 0.0 39 0.0017550689582548872 0.0 0.0 20.144043295955683 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCACG 20 7.030829E-4 45.0 1 GTCGATT 20 7.030829E-4 45.0 32 CACGAAA 20 7.030829E-4 45.0 25 TTGAGCG 55 1.8189894E-12 45.0 1 AGGTTCG 20 7.030829E-4 45.0 2 AAGCACG 20 7.030829E-4 45.0 1 CCACGAT 20 7.030829E-4 45.0 44 TAAGACG 20 7.030829E-4 45.0 1 TCAACGG 20 7.030829E-4 45.0 2 TTAACGG 30 2.1639153E-6 44.999996 2 CGTTAGG 55 6.002665E-11 40.909092 2 CACGAGG 50 1.0804797E-9 40.500004 2 ACGGGAA 200 0.0 40.500004 5 GCGATAT 50 1.0804797E-9 40.500004 9 CAATAGG 90 0.0 40.0 2 ACGGGAG 260 0.0 39.80769 5 TACGGGA 125 0.0 39.600002 4 TAGTTAC 35 6.243741E-6 38.57143 14 TATCGAG 35 6.243741E-6 38.57143 1 CGTAAGG 100 0.0 38.250004 2 >>END_MODULE