SRR2935593.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935593.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	887222
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3957	0.4459988593610168	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGC	3922	0.44205396169166233	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTC	3911	0.4408141367098652	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCG	3908	0.4404760026239205	No Hit
GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	2191	0.246950594101589	Illumina PCR Primer Index 5 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	1755	0.19780844027763064	Illumina PCR Primer Index 5 (95% over 23bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1333	0.15024424552141402	No Hit
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT	1232	0.1388603979612769	Illumina PCR Primer Index 5 (95% over 24bp)
CGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTG	1182	0.13322482986219908	Illumina PCR Primer Index 5 (95% over 22bp)
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	1000	0.1127113619815559	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCC	920	0.10369445302303144	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	35	1.2115015E-7	45.0	1
ACGATCC	20	7.032416E-4	45.0	44
TGCGACG	35	1.2115015E-7	45.0	1
TCTCGAC	20	7.032416E-4	45.0	14
TACACCG	20	7.032416E-4	45.0	18
TCACGAC	80	0.0	42.1875	25
TAGTACG	60	3.6379788E-12	41.250004	1
CGGGTAC	110	0.0	40.909092	6
AGTACGG	125	0.0	39.6	2
GTTCACG	40	3.4570257E-7	39.375	1
TACGAAT	185	0.0	38.91892	12
CGTTTTT	2035	0.0	38.918915	1
ACGGGTA	145	0.0	38.793106	5
ACGCTAG	35	6.246679E-6	38.571426	1
TCGAGAC	35	6.246679E-6	38.571426	44
CGAATAT	190	0.0	37.894737	14
CACGACC	60	1.546141E-10	37.500004	27
ACGTGCG	30	1.139712E-4	37.500004	1
AATCGCG	30	1.139712E-4	37.500004	1
AAATGCG	30	1.139712E-4	37.500004	1