##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935593.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 887222 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.114182245255414 33.0 31.0 34.0 30.0 34.0 2 32.13636834974786 33.0 31.0 34.0 30.0 34.0 3 32.13136734661674 33.0 31.0 34.0 30.0 34.0 4 35.79773833381048 37.0 35.0 37.0 35.0 37.0 5 35.86596364833154 37.0 35.0 37.0 35.0 37.0 6 35.81758004197371 37.0 35.0 37.0 35.0 37.0 7 36.080791504268376 37.0 35.0 37.0 35.0 37.0 8 35.882340609227455 37.0 35.0 37.0 35.0 37.0 9 37.69694957969933 39.0 38.0 39.0 35.0 39.0 10 37.34578267896874 39.0 37.0 39.0 34.0 39.0 11 37.34943678132418 39.0 37.0 39.0 34.0 39.0 12 37.259088480673384 39.0 37.0 39.0 34.0 39.0 13 37.227312893503544 39.0 37.0 39.0 34.0 39.0 14 38.37747035127623 40.0 38.0 41.0 34.0 41.0 15 38.484795237268685 40.0 38.0 41.0 34.0 41.0 16 38.294344594701215 40.0 37.0 41.0 34.0 41.0 17 38.32820646918133 40.0 37.0 41.0 34.0 41.0 18 38.24712304248542 40.0 37.0 41.0 34.0 41.0 19 38.0973048459123 40.0 37.0 41.0 34.0 41.0 20 38.20483599369718 40.0 37.0 41.0 34.0 41.0 21 38.13303660188769 40.0 37.0 41.0 34.0 41.0 22 38.235608449745385 40.0 37.0 41.0 34.0 41.0 23 38.265023860995335 40.0 37.0 41.0 34.0 41.0 24 38.195652271922924 40.0 37.0 41.0 34.0 41.0 25 37.968925477501685 40.0 36.0 41.0 34.0 41.0 26 38.03479512455733 40.0 36.0 41.0 34.0 41.0 27 38.024902448316205 40.0 36.0 41.0 34.0 41.0 28 37.91861676108122 40.0 36.0 41.0 34.0 41.0 29 37.9023536386609 40.0 36.0 41.0 34.0 41.0 30 37.710063546665886 40.0 36.0 41.0 33.0 41.0 31 37.672047131383124 40.0 36.0 41.0 33.0 41.0 32 37.60535807272588 40.0 36.0 41.0 33.0 41.0 33 37.503216782270954 40.0 36.0 41.0 33.0 41.0 34 37.42608727015335 40.0 36.0 41.0 33.0 41.0 35 37.317435771430375 40.0 35.0 41.0 33.0 41.0 36 37.19458489532496 40.0 35.0 41.0 32.0 41.0 37 37.15717937562414 40.0 35.0 41.0 32.0 41.0 38 37.04921203486839 40.0 35.0 41.0 32.0 41.0 39 37.00014088920248 40.0 35.0 41.0 32.0 41.0 40 36.891559271523924 39.0 35.0 41.0 31.0 41.0 41 36.76411653453138 39.0 35.0 41.0 31.0 41.0 42 36.751962868368906 39.0 35.0 41.0 31.0 41.0 43 36.689307749356985 39.0 35.0 41.0 31.0 41.0 44 36.568693066673276 39.0 35.0 41.0 31.0 41.0 45 36.54271760619101 39.0 35.0 41.0 31.0 41.0 46 36.404503044333886 39.0 35.0 41.0 31.0 41.0 47 36.32458618023448 39.0 35.0 41.0 30.0 41.0 48 36.22525027557928 39.0 35.0 41.0 30.0 41.0 49 36.173217075320494 39.0 35.0 41.0 30.0 41.0 50 36.04936194097982 38.0 35.0 40.0 30.0 41.0 51 34.89176891465721 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 18.0 10 26.0 11 26.0 12 29.0 13 17.0 14 28.0 15 54.0 16 72.0 17 123.0 18 244.0 19 381.0 20 706.0 21 1230.0 22 1861.0 23 2791.0 24 3860.0 25 5394.0 26 7365.0 27 8622.0 28 9307.0 29 10316.0 30 12085.0 31 15113.0 32 19746.0 33 27221.0 34 51645.0 35 69650.0 36 61588.0 37 93672.0 38 169577.0 39 314251.0 40 198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.78207709006314 20.12089420686142 23.68516560680416 13.411863096271281 2 32.362475231678204 25.760294492246587 24.239480085029452 17.637750191045757 3 31.285292745220474 24.2703629982124 27.506418912064852 16.93792534450228 4 28.92286259808706 23.925353519186853 28.21199203806939 18.939791844656693 5 26.031252606450245 29.031516351037283 25.401308804335333 19.535922238177143 6 25.152780251166 34.90963930109939 25.222886718318527 14.714693729416087 7 77.50326299392937 5.950596355816244 11.557648480312706 4.988492169941683 8 78.01643782503139 7.185236614962208 9.766777649787764 5.031547910218637 9 71.95110130271793 7.628304978911704 12.055607277547221 8.364986440823154 10 40.16751162617699 24.42049453237183 19.52938497918221 15.88260886226897 11 30.550978221910636 25.311027003388105 25.18264876209111 18.955346012610146 12 28.272405328091505 21.841658570233832 29.622800155992522 20.26313594568214 13 24.943024406518326 23.021971952904686 31.507897685134047 20.527105955442945 14 20.15797624495335 27.214045639084695 30.009400127589263 22.618577988372696 15 18.968307819238024 25.587620685690844 34.79974572316737 20.644325771903763 16 22.012867129083816 24.279605329894885 31.56154829343727 22.145979247584034 17 21.191990279772142 25.38823428634547 29.540746284469954 23.879029149412435 18 22.720919905051947 25.584352056193378 29.32400233537942 22.370725703375253 19 23.710638374611992 27.08499112961581 27.381083877541357 21.823286618230835 20 25.06779588423191 25.897126085692197 28.983501310833137 20.05157671924276 21 24.726731302875717 26.951090031581725 28.3054297571521 20.016748908390458 22 22.704125912116695 24.841809603458888 28.567934519207146 23.886129965217272 23 22.307945474751527 26.240219471564053 28.832355374415876 22.619479679268547 24 22.816273717288347 24.928033795374777 29.049662880316312 23.206029607020564 25 22.41535940271995 26.228272067194002 27.830689500485782 23.52567902960026 26 21.67833980672256 26.481759920290525 28.36494135627836 23.47495891670856 27 22.829235523916225 26.84299983544141 28.410138612432966 21.9176260282094 28 20.528007646338796 26.927984202375505 30.553683294598194 21.990324856687504 29 23.34973659354705 24.97672510375081 29.366832652932413 22.306705649769732 30 23.161170484951906 25.067232327421994 29.771353731084215 22.00024345654188 31 23.138853635279556 25.77010038073898 27.894033285919424 23.197012698062043 32 24.102535780221864 25.854408479501185 28.617978363926955 21.42507737635 33 23.704439249703004 25.255573013293176 27.85266821607219 23.187319520931627 34 22.276611716120655 24.882047559686303 29.391516441206374 23.44982428298667 35 22.5042886673234 23.54686876565279 30.3092123504602 23.63963021656361 36 23.207607566088306 25.922148008052098 28.775548847977166 22.094695577882423 37 21.37886571793756 26.844803217233114 30.075561697072434 21.700769367756887 38 21.709560853991448 25.598440976441072 29.361084373471353 23.330913796096127 39 22.880857327703776 24.419141996028053 28.286945093787125 24.413055582481046 40 23.403725335936215 23.37148988640949 30.654898097657636 22.569886679996664 41 20.30664253140702 24.759530309212348 29.577602899837924 25.35622425954271 42 21.154006550784356 24.987319971777076 30.349901152135544 23.508772325303024 43 22.403524709711885 23.95240424606243 29.19630036225432 24.447770681971367 44 22.666142183128912 24.39445820775409 28.991841951619772 23.94755765749722 45 22.329586056251987 23.404288892746123 28.975386092770467 25.290738958231422 46 22.951640063028194 25.388008863621508 28.031315724812956 23.629035348537343 47 21.106780490114087 23.879029149412435 31.70356460953403 23.310625750939447 48 21.37672420205991 23.462447955528607 30.86634461273503 24.29448322967645 49 21.414482508323733 23.491527486919846 31.152518760806203 23.941471243950218 50 20.638915626528647 23.18822121182748 30.870627644490327 25.302235517153544 51 20.41450730482337 23.073593756692237 29.1646284695375 27.347270468946896 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 325.0 1 993.0 2 1661.0 3 4197.0 4 6733.0 5 4526.5 6 2320.0 7 2264.0 8 2208.0 9 2166.5 10 2125.0 11 2180.5 12 2236.0 13 2129.5 14 2023.0 15 2169.0 16 2315.0 17 2452.5 18 2590.0 19 2585.5 20 2581.0 21 2920.0 22 3259.0 23 3426.5 24 3594.0 25 4524.0 26 6129.0 27 6804.0 28 9002.0 29 11200.0 30 12946.0 31 14692.0 32 16073.5 33 17455.0 34 20216.5 35 22978.0 36 25047.5 37 27117.0 38 29433.0 39 31749.0 40 35824.0 41 39899.0 42 43098.5 43 46298.0 44 51977.5 45 57657.0 46 71663.5 47 85670.0 48 85309.5 49 84949.0 50 83254.5 51 81560.0 52 70935.5 53 60311.0 54 53357.0 55 46403.0 56 43674.0 57 40945.0 58 40690.0 59 40435.0 60 39398.5 61 38362.0 62 34368.0 63 30374.0 64 26761.0 65 23148.0 66 18771.0 67 14394.0 68 12268.0 69 10142.0 70 8402.5 71 6663.0 72 5190.0 73 3717.0 74 2944.0 75 1823.0 76 1475.0 77 1046.0 78 617.0 79 474.5 80 332.0 81 232.0 82 132.0 83 106.0 84 80.0 85 54.5 86 29.0 87 18.5 88 8.0 89 11.0 90 14.0 91 13.0 92 12.0 93 7.5 94 3.0 95 2.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 887222.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.560861285217953 #Duplication Level Percentage of deduplicated Percentage of total 1 74.21038832639923 21.195126069124456 2 9.64057202380744 5.506860805642344 3 3.380118798894639 2.896173124283619 4 1.7561419686630302 2.006277086565375 5 1.0686476744340752 1.5260748996141185 6 0.7788566150729705 1.3346889446504102 7 0.620466916820902 1.2404748680372053 8 0.5163851293215116 1.179872323864082 9 0.44928235639308206 1.1548701952954803 >10 7.1170168309412345 48.533561422538824 >50 0.40301917055812914 6.969448997956475 >100 0.049187378510254114 2.5805892299627167 >500 0.006346758517452142 1.2259441591635156 >1k 0.0035700516660668296 2.650037873301339 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3957 0.4459988593610168 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGC 3922 0.44205396169166233 No Hit GAATCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTC 3911 0.4408141367098652 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCG 3908 0.4404760026239205 No Hit GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC 2191 0.246950594101589 Illumina PCR Primer Index 5 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC 1755 0.19780844027763064 Illumina PCR Primer Index 5 (95% over 23bp) TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 1333 0.15024424552141402 No Hit CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT 1232 0.1388603979612769 Illumina PCR Primer Index 5 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTG 1182 0.13322482986219908 Illumina PCR Primer Index 5 (95% over 22bp) GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC 1000 0.1127113619815559 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCC 920 0.10369445302303144 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.5084544792622363E-4 0.0 0.0 0.14990611143546936 0.0 2 4.5084544792622363E-4 0.0 0.0 0.7586601774978529 0.0 3 4.5084544792622363E-4 0.0 0.0 1.1577711102745423 0.0 4 4.5084544792622363E-4 0.0 0.0 1.6396121827456938 0.0 5 4.5084544792622363E-4 0.0 0.0 3.0480533620672166 0.0 6 4.5084544792622363E-4 0.0 0.0 3.9533510215030736 0.0 7 4.5084544792622363E-4 0.0 0.0 4.742443266735947 0.0 8 4.5084544792622363E-4 0.0 0.0 5.805085987498056 0.0 9 4.5084544792622363E-4 0.0 0.0 6.290533823552617 0.0 10 4.5084544792622363E-4 0.0 0.0 7.649156580878292 0.0 11 4.5084544792622363E-4 0.0 0.0 8.875568910599602 0.0 12 4.5084544792622363E-4 0.0 0.0 10.2010545275027 0.0 13 4.5084544792622363E-4 0.0 0.0 10.590246860425012 0.0 14 4.5084544792622363E-4 0.0 0.0 10.759877460207253 0.0 15 4.5084544792622363E-4 0.0 0.0 11.094404782568512 0.0 16 4.5084544792622363E-4 0.0 0.0 11.644999785848412 0.0 17 4.5084544792622363E-4 0.0 0.0 12.289483353658948 0.0 18 4.5084544792622363E-4 0.0 0.0 13.002833563640216 0.0 19 5.635568099077795E-4 0.0 0.0 13.503384722200305 0.0 20 5.635568099077795E-4 0.0 0.0 13.945213261168005 0.0 21 5.635568099077795E-4 0.0 0.0 14.47788715789284 0.0 22 6.762681718893355E-4 0.0 0.0 15.058350672097852 0.0 23 6.762681718893355E-4 0.0 0.0 15.619991388851945 0.0 24 6.762681718893355E-4 0.0 0.0 16.06159450509568 0.0 25 6.762681718893355E-4 0.0 0.0 16.487868876109925 0.0 26 6.762681718893355E-4 0.0 0.0 16.863648556956434 0.0 27 6.762681718893355E-4 0.0 0.0 17.273805203207313 0.0 28 6.762681718893355E-4 0.0 0.0 17.666942433798983 0.0 29 6.762681718893355E-4 0.0 0.0 18.078789750479586 0.0 30 7.889795338708914E-4 0.0 0.0 18.579340909039676 0.0 31 7.889795338708914E-4 0.0 0.0 19.016210148080187 0.0 32 7.889795338708914E-4 0.0 0.0 19.43572183737554 0.0 33 7.889795338708914E-4 0.0 0.0 19.851175917639555 0.0 34 9.016908958524473E-4 0.0 0.0 20.24791991181463 0.0 35 9.016908958524473E-4 0.0 0.0 20.665628219318275 0.0 36 9.016908958524473E-4 0.0 0.0 21.06372474983713 0.0 37 9.016908958524473E-4 0.0 0.0 21.462610259889857 0.0 38 9.016908958524473E-4 0.0 0.0 21.863862708544197 0.0 39 0.0010144022578340032 0.0 0.0 22.269398188953836 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAGCG 35 1.2115015E-7 45.0 1 ACGATCC 20 7.032416E-4 45.0 44 TGCGACG 35 1.2115015E-7 45.0 1 TCTCGAC 20 7.032416E-4 45.0 14 TACACCG 20 7.032416E-4 45.0 18 TCACGAC 80 0.0 42.1875 25 TAGTACG 60 3.6379788E-12 41.250004 1 CGGGTAC 110 0.0 40.909092 6 AGTACGG 125 0.0 39.6 2 GTTCACG 40 3.4570257E-7 39.375 1 TACGAAT 185 0.0 38.91892 12 CGTTTTT 2035 0.0 38.918915 1 ACGGGTA 145 0.0 38.793106 5 ACGCTAG 35 6.246679E-6 38.571426 1 TCGAGAC 35 6.246679E-6 38.571426 44 CGAATAT 190 0.0 37.894737 14 CACGACC 60 1.546141E-10 37.500004 27 ACGTGCG 30 1.139712E-4 37.500004 1 AATCGCG 30 1.139712E-4 37.500004 1 AAATGCG 30 1.139712E-4 37.500004 1 >>END_MODULE